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Journal Abstract Search

536 related items for PubMed ID: 19401400

  • 1. List-decoding methods for inferring polynomials in finite dynamical gene network models.
    Dingel J, Milenkovic O.
    Bioinformatics; 2009 Jul 01; 25(13):1686-93. PubMed ID: 19401400
    [Abstract] [Full Text] [Related]

  • 2. The condition-dependent transcriptional network in Escherichia coli.
    Lemmens K, De Bie T, Dhollander T, Monsieurs P, De Moor B, Collado-Vides J, Engelen K, Marchal K.
    Ann N Y Acad Sci; 2009 Mar 01; 1158():29-35. PubMed ID: 19348629
    [Abstract] [Full Text] [Related]

  • 3. Structural systems identification of genetic regulatory networks.
    Xiong H, Choe Y.
    Bioinformatics; 2008 Feb 15; 24(4):553-60. PubMed ID: 18175769
    [Abstract] [Full Text] [Related]

  • 4. Gene expression complex networks: synthesis, identification, and analysis.
    Lopes FM, Cesar RM, Costa Lda F.
    J Comput Biol; 2011 Oct 15; 18(10):1353-67. PubMed ID: 21548810
    [Abstract] [Full Text] [Related]

  • 5. ReTRN: a retriever of real transcriptional regulatory network and expression data for evaluating structure learning algorithm.
    Li Y, Zhu Y, Bai X, Cai H, Ji W, Guo D.
    Genomics; 2009 Nov 15; 94(5):349-54. PubMed ID: 19712740
    [Abstract] [Full Text] [Related]

  • 6. A microarray data-based semi-kinetic method for predicting quantitative dynamics of genetic networks.
    Yugi K, Nakayama Y, Kojima S, Kitayama T, Tomita M.
    BMC Bioinformatics; 2005 Dec 13; 6():299. PubMed ID: 16351711
    [Abstract] [Full Text] [Related]

  • 7. Inferring large-scale gene regulatory networks using a low-order constraint-based algorithm.
    Wang M, Augusto Benedito V, Xuechun Zhao P, Udvardi M.
    Mol Biosyst; 2010 Jun 13; 6(6):988-98. PubMed ID: 20485743
    [Abstract] [Full Text] [Related]

  • 8. Reverse engineering of gene networks with LASSO and nonlinear basis functions.
    Gustafsson M, Hörnquist M, Lundström J, Björkegren J, Tegnér J.
    Ann N Y Acad Sci; 2009 Mar 13; 1158():265-75. PubMed ID: 19348648
    [Abstract] [Full Text] [Related]

  • 9. Genetic network identification using convex programming.
    Julius A, Zavlanos M, Boyd S, Pappas GJ.
    IET Syst Biol; 2009 May 13; 3(3):155-66. PubMed ID: 19449976
    [Abstract] [Full Text] [Related]

  • 10. Combining multiple results of a reverse-engineering algorithm: application to the DREAM five-gene network challenge.
    Marbach D, Mattiussi C, Floreano D.
    Ann N Y Acad Sci; 2009 Mar 13; 1158():102-13. PubMed ID: 19348636
    [Abstract] [Full Text] [Related]

  • 11. Genetic network inference as a series of discrimination tasks.
    Kimura S, Nakayama S, Hatakeyama M.
    Bioinformatics; 2009 Apr 01; 25(7):918-25. PubMed ID: 19189976
    [Abstract] [Full Text] [Related]

  • 12. Reverse engineering genetic networks using evolutionary computation.
    Noman N, Iba H.
    Genome Inform; 2005 Apr 01; 16(2):205-14. PubMed ID: 16901103
    [Abstract] [Full Text] [Related]

  • 13. A gene network simulator to assess reverse engineering algorithms.
    Di Camillo B, Toffolo G, Cobelli C.
    Ann N Y Acad Sci; 2009 Mar 01; 1158():125-42. PubMed ID: 19348638
    [Abstract] [Full Text] [Related]

  • 14. A new multiple regression approach for the construction of genetic regulatory networks.
    Zhang SQ, Ching WK, Tsing NK, Leung HY, Guo D.
    Artif Intell Med; 2010 Mar 01; 48(2-3):153-60. PubMed ID: 19963359
    [Abstract] [Full Text] [Related]

  • 15. A computational algebra approach to the reverse engineering of gene regulatory networks.
    Laubenbacher R, Stigler B.
    J Theor Biol; 2004 Aug 21; 229(4):523-37. PubMed ID: 15246788
    [Abstract] [Full Text] [Related]

  • 16. Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data.
    Soranzo N, Bianconi G, Altafini C.
    Bioinformatics; 2007 Jul 01; 23(13):1640-7. PubMed ID: 17485431
    [Abstract] [Full Text] [Related]

  • 17. Learning gene regulatory networks from gene expression measurements using non-parametric molecular kinetics.
    Aijö T, Lähdesmäki H.
    Bioinformatics; 2009 Nov 15; 25(22):2937-44. PubMed ID: 19706742
    [Abstract] [Full Text] [Related]

  • 18. Reconstruction of metabolic networks from high-throughput metabolite profiling data: in silico analysis of red blood cell metabolism.
    Nemenman I, Escola GS, Hlavacek WS, Unkefer PJ, Unkefer CJ, Wall ME.
    Ann N Y Acad Sci; 2007 Dec 15; 1115():102-15. PubMed ID: 17925356
    [Abstract] [Full Text] [Related]

  • 19. Fast calculation of pairwise mutual information for gene regulatory network reconstruction.
    Qiu P, Gentles AJ, Plevritis SK.
    Comput Methods Programs Biomed; 2009 May 15; 94(2):177-80. PubMed ID: 19167129
    [Abstract] [Full Text] [Related]

  • 20. EXAMINE: a computational approach to reconstructing gene regulatory networks.
    Deng X, Geng H, Ali H.
    Biosystems; 2005 Aug 15; 81(2):125-36. PubMed ID: 15951103
    [Abstract] [Full Text] [Related]

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