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Journal Abstract Search

1045 related items for PubMed ID: 19422056

  • 1. Beyond the Twilight Zone: automated prediction of structural properties of proteins by recursive neural networks and remote homology information.
    Mooney C, Pollastri G.
    Proteins; 2009 Oct; 77(1):181-90. PubMed ID: 19422056
    [Abstract] [Full Text] [Related]

  • 2. PFRES: protein fold classification by using evolutionary information and predicted secondary structure.
    Chen K, Kurgan L.
    Bioinformatics; 2007 Nov 01; 23(21):2843-50. PubMed ID: 17942446
    [Abstract] [Full Text] [Related]

  • 3. Better prediction of sub-cellular localization by combining evolutionary and structural information.
    Nair R, Rost B.
    Proteins; 2003 Dec 01; 53(4):917-30. PubMed ID: 14635133
    [Abstract] [Full Text] [Related]

  • 4. Sequence comparison and protein structure prediction.
    Dunbrack RL.
    Curr Opin Struct Biol; 2006 Jun 01; 16(3):374-84. PubMed ID: 16713709
    [Abstract] [Full Text] [Related]

  • 5. Combining evolutionary and structural information for local protein structure prediction.
    Pei J, Grishin NV.
    Proteins; 2004 Sep 01; 56(4):782-94. PubMed ID: 15281130
    [Abstract] [Full Text] [Related]

  • 6. Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.
    Kundrotas PJ, Lensink MF, Alexov E.
    Int J Biol Macromol; 2008 Aug 15; 43(2):198-208. PubMed ID: 18572239
    [Abstract] [Full Text] [Related]

  • 7. Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.
    Yona G, Levitt M.
    J Mol Biol; 2002 Feb 01; 315(5):1257-75. PubMed ID: 11827492
    [Abstract] [Full Text] [Related]

  • 8. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J, Feng JA.
    Proteins; 2005 Feb 15; 58(3):628-37. PubMed ID: 15616964
    [Abstract] [Full Text] [Related]

  • 9. A neural network method for prediction of beta-turn types in proteins using evolutionary information.
    Kaur H, Raghava GP.
    Bioinformatics; 2004 Nov 01; 20(16):2751-8. PubMed ID: 15145798
    [Abstract] [Full Text] [Related]

  • 10. A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence.
    Rice DW, Eisenberg D.
    J Mol Biol; 1997 Apr 11; 267(4):1026-38. PubMed ID: 9135128
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  • 14. Increased detection of structural templates using alignments of designed sequences.
    Larson SM, Garg A, Desjarlais JR, Pande VS.
    Proteins; 2003 May 15; 51(3):390-6. PubMed ID: 12696050
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  • 15. Achieving 80% ten-fold cross-validated accuracy for secondary structure prediction by large-scale training.
    Dor O, Zhou Y.
    Proteins; 2007 Mar 01; 66(4):838-45. PubMed ID: 17177203
    [Abstract] [Full Text] [Related]

  • 16. Prediction of protein structure by evaluation of sequence-structure fitness. Aligning sequences to contact profiles derived from three-dimensional structures.
    Ouzounis C, Sander C, Scharf M, Schneider R.
    J Mol Biol; 1993 Aug 05; 232(3):805-25. PubMed ID: 8355272
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  • 20. Prediction of 3D metal binding sites from translated gene sequences based on remote-homology templates.
    Levy R, Edelman M, Sobolev V.
    Proteins; 2009 Aug 01; 76(2):365-74. PubMed ID: 19173310
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