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Journal Abstract Search

235 related items for PubMed ID: 19425135

  • 1. A novel strategy to search conserved transcription factor binding sites among coexpressing genes in human.
    Hatanaka Y, Nagasaki M, Yamaguchi R, Obayashi T, Numata K, Fujita A, Shimamura T, Tamada Y, Imoto S, Kinoshita K, Nakai K, Miyano S.
    Genome Inform; 2008; 20():212-21. PubMed ID: 19425135
    [Abstract] [Full Text] [Related]

  • 2. Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.
    Kim SY, Kim Y.
    BMC Bioinformatics; 2006 Jul 04; 7():330. PubMed ID: 16817975
    [Abstract] [Full Text] [Related]

  • 3. Integrating genomic data to predict transcription factor binding.
    Holloway DT, Kon M, DeLisi C.
    Genome Inform; 2005 Jul 04; 16(1):83-94. PubMed ID: 16362910
    [Abstract] [Full Text] [Related]

  • 4. STOP: searching for transcription factor motifs using gene expression.
    Hertzberg L, Izraeli S, Domany E.
    Bioinformatics; 2007 Jul 15; 23(14):1737-43. PubMed ID: 17488754
    [Abstract] [Full Text] [Related]

  • 5. FactorY, a bioinformatic resource for genome-wide promoter analysis.
    Guruceaga E, Segura V, Corrales FJ, Rubio A.
    Comput Biol Med; 2009 Apr 15; 39(4):385-7. PubMed ID: 19272592
    [Abstract] [Full Text] [Related]

  • 6. Genome-wide proximal promoter analysis and interpretation.
    Guruceaga E, Segura V, Corrales FJ, Rubio A.
    Methods Mol Biol; 2010 Apr 15; 593():157-74. PubMed ID: 19957149
    [Abstract] [Full Text] [Related]

  • 7. Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression.
    Murakami K, Kojima T, Sakaki Y.
    BMC Genomics; 2004 Feb 23; 5(1):16. PubMed ID: 15053842
    [Abstract] [Full Text] [Related]

  • 8. Analysis of promoter regions of co-expressed genes identified by microarray analysis.
    Veerla S, Höglund M.
    BMC Bioinformatics; 2006 Aug 17; 7():384. PubMed ID: 16916454
    [Abstract] [Full Text] [Related]

  • 9. High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons.
    McGrath PT, Lee H, Zhang L, Iniesta AA, Hottes AK, Tan MH, Hillson NJ, Hu P, Shapiro L, McAdams HH.
    Nat Biotechnol; 2007 May 17; 25(5):584-92. PubMed ID: 17401361
    [Abstract] [Full Text] [Related]

  • 10. Genome-wide analysis of factors regulating gene expression in liver.
    Teufel A, Weinmann A, Krupp M, Budinger M, Galle PR.
    Gene; 2007 Mar 15; 389(2):114-21. PubMed ID: 17174484
    [Abstract] [Full Text] [Related]

  • 11. Inference of transcriptional regulation using gene expression data from the bovine and human genomes.
    Zadissa A, McEwan JC, Brown CM.
    BMC Genomics; 2007 Aug 03; 8():265. PubMed ID: 17683551
    [Abstract] [Full Text] [Related]

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  • 13. Functional inference from non-random distributions of conserved predicted transcription factor binding sites.
    Dieterich C, Rahmann S, Vingron M.
    Bioinformatics; 2004 Aug 04; 20 Suppl 1():i109-15. PubMed ID: 15262788
    [Abstract] [Full Text] [Related]

  • 14. Identification of highly specific localized sequence motifs in human ribosomal protein gene promoters.
    Roepcke S, Zhi D, Vingron M, Arndt PF.
    Gene; 2006 Jan 03; 365():48-56. PubMed ID: 16343812
    [Abstract] [Full Text] [Related]

  • 15. Nitric oxide-responsive genes and promoters in Arabidopsis thaliana: a bioinformatics approach.
    Palmieri MC, Sell S, Huang X, Scherf M, Werner T, Durner J, Lindermayr C.
    J Exp Bot; 2008 Jan 03; 59(2):177-86. PubMed ID: 18272923
    [Abstract] [Full Text] [Related]

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  • 17. CREME: Cis-Regulatory Module Explorer for the human genome.
    Sharan R, Ben-Hur A, Loots GG, Ovcharenko I.
    Nucleic Acids Res; 2004 Jul 01; 32(Web Server issue):W253-6. PubMed ID: 15215390
    [Abstract] [Full Text] [Related]

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  • 19. Computational modeling of oligonucleotide positional densities for human promoter prediction.
    Narang V, Sung WK, Mittal A.
    Artif Intell Med; 2005 Jul 01; 35(1-2):107-19. PubMed ID: 16076553
    [Abstract] [Full Text] [Related]

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