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367 related items for PubMed ID: 19449975

  • 1. Modelling and analysis of the sugar cataract development process using stochastic hybrid systems.
    Riley D, Koutsoukos X, Riley K.
    IET Syst Biol; 2009 May; 3(3):137-54. PubMed ID: 19449975
    [Abstract] [Full Text] [Related]

  • 2. Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions.
    Salis H, Kaznessis Y.
    J Chem Phys; 2005 Feb 01; 122(5):54103. PubMed ID: 15740306
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  • 3. Modelling metapopulations with stochastic membrane systems.
    Besozzi D, Cazzaniga P, Pescini D, Mauri G.
    Biosystems; 2008 Mar 01; 91(3):499-514. PubMed ID: 17904729
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  • 4. Stochastic P systems and the simulation of biochemical processes with dynamic compartments.
    Spicher A, Michel O, Cieslak M, Giavitto JL, Prusinkiewicz P.
    Biosystems; 2008 Mar 01; 91(3):458-72. PubMed ID: 17728055
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  • 5. The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior.
    McCollum JM, Peterson GD, Cox CD, Simpson ML, Samatova NF.
    Comput Biol Chem; 2006 Feb 01; 30(1):39-49. PubMed ID: 16321569
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  • 6. Nested uncertainties in biochemical models.
    Schaber J, Liebermeister W, Klipp E.
    IET Syst Biol; 2009 Jan 01; 3(1):1-9. PubMed ID: 19154080
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  • 7. Stochastic approaches for modelling in vivo reactions.
    Turner TE, Schnell S, Burrage K.
    Comput Biol Chem; 2004 Jul 01; 28(3):165-78. PubMed ID: 15261147
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  • 8. An equation-free probabilistic steady-state approximation: dynamic application to the stochastic simulation of biochemical reaction networks.
    Salis H, Kaznessis YN.
    J Chem Phys; 2005 Dec 01; 123(21):214106. PubMed ID: 16356038
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  • 9. Taming the complexity of biological pathways through parallel computing.
    Ballarini P, Guido R, Mazza T, Prandi D.
    Brief Bioinform; 2009 May 01; 10(3):278-88. PubMed ID: 19339382
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  • 10. A multi-scaled approach for simulating chemical reaction systems.
    Burrage K, Tian T, Burrage P.
    Prog Biophys Mol Biol; 2004 May 01; 85(2-3):217-34. PubMed ID: 15142745
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  • 11. An efficient and exact stochastic simulation method to analyze rare events in biochemical systems.
    Kuwahara H, Mura I.
    J Chem Phys; 2008 Oct 28; 129(16):165101. PubMed ID: 19045316
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  • 12. Efficient exact and K-skip methods for stochastic simulation of coupled chemical reactions.
    Cai X, Wen J.
    J Chem Phys; 2009 Aug 14; 131(6):064108. PubMed ID: 19691379
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  • 13. Methods for simulating the dynamics of complex biological processes.
    Schilstra MJ, Martin SR, Keating SM.
    Methods Cell Biol; 2008 Aug 14; 84():807-42. PubMed ID: 17964950
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  • 14. A hybrid approach for efficient and robust parameter estimation in biochemical pathways.
    Rodriguez-Fernandez M, Mendes P, Banga JR.
    Biosystems; 2006 Aug 14; 83(2-3):248-65. PubMed ID: 16236429
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  • 15. Computing chemical organizations in biological networks.
    Centler F, Kaleta C, di Fenizio PS, Dittrich P.
    Bioinformatics; 2008 Jul 15; 24(14):1611-8. PubMed ID: 18480100
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  • 16. Abstract Next Subvolume Method: a logical process-based approach for spatial stochastic simulation of chemical reactions.
    Wang B, Hou B, Xing F, Yao Y.
    Comput Biol Chem; 2011 Jun 15; 35(3):193-8. PubMed ID: 21704266
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  • 17. SysBioMed report: advancing systems biology for medical applications.
    Wolkenhauer O, Fell D, De Meyts P, Blüthgen N, Herzel H, Le Novère N, Höfer T, Schürrle K, van Leeuwen I.
    IET Syst Biol; 2009 May 15; 3(3):131-6. PubMed ID: 19449974
    [Abstract] [Full Text] [Related]

  • 18. Mass fluctuation kinetics: capturing stochastic effects in systems of chemical reactions through coupled mean-variance computations.
    Gómez-Uribe CA, Verghese GC.
    J Chem Phys; 2007 Jan 14; 126(2):024109. PubMed ID: 17228945
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  • 19. Accelerated stochastic simulation algorithm for coupled chemical reactions with delays.
    Zhou W, Peng X, Yan Z, Wang Y.
    Comput Biol Chem; 2008 Aug 14; 32(4):240-2. PubMed ID: 18467179
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  • 20. A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks.
    Ramaswamy R, González-Segredo N, Sbalzarini IF.
    J Chem Phys; 2009 Jun 28; 130(24):244104. PubMed ID: 19566139
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