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244 related items for PubMed ID: 19469526

  • 1. Molecular insights into 14-membered macrolides using the MM-PBSA method.
    Yam WK, Wahab HA.
    J Chem Inf Model; 2009 Jun; 49(6):1558-67. PubMed ID: 19469526
    [Abstract] [Full Text] [Related]

  • 2. Refinement of a low-resolution crystal structure to better understand erythromycin interactions on large ribosomal subunit.
    Wahab HA, Yam WK, Samian MR, Najimudin N.
    J Biomol Struct Dyn; 2008 Aug; 26(1):131-46. PubMed ID: 18533733
    [Abstract] [Full Text] [Related]

  • 3. Macrolide antibiotics in the ribosome exit tunnel: species-specific binding and action.
    Kannan K, Mankin AS.
    Ann N Y Acad Sci; 2011 Dec; 1241():33-47. PubMed ID: 22191525
    [Abstract] [Full Text] [Related]

  • 4. The structural basis of macrolide-ribosome binding assessed using mutagenesis of 23S rRNA positions 2058 and 2059.
    Pfister P, Jenni S, Poehlsgaard J, Thomas A, Douthwaite S, Ban N, Böttger EC.
    J Mol Biol; 2004 Oct 01; 342(5):1569-81. PubMed ID: 15364582
    [Abstract] [Full Text] [Related]

  • 5. A new insight into solid-state conformation of macrolide antibiotics.
    Miroshnyk I, Mirza S, Zorky PM, Heinämäki J, Yli-Kauhaluoma J, Yliruusi J.
    Bioorg Med Chem; 2008 Jan 01; 16(1):232-9. PubMed ID: 17936632
    [Abstract] [Full Text] [Related]

  • 6. Free energy simulations and MM-PBSA analyses on the affinity and specificity of steroid binding to antiestradiol antibody.
    Laitinen T, Kankare JA, Peräkylä M.
    Proteins; 2004 Apr 01; 55(1):34-43. PubMed ID: 14997538
    [Abstract] [Full Text] [Related]

  • 7. Molecular insight into pseudolysin inhibition using the MM-PBSA and LIE methods.
    Adekoya OA, Willassen NP, Sylte I.
    J Struct Biol; 2006 Feb 01; 153(2):129-44. PubMed ID: 16376106
    [Abstract] [Full Text] [Related]

  • 8. Erythromycin, Cethromycin and Solithromycin display similar binding affinities to the E. coli's ribosome: A molecular simulation study.
    Nguyen HL, An PH, Thai NQ, Linh HQ, Li MS.
    J Mol Graph Model; 2019 Sep 01; 91():80-90. PubMed ID: 31200217
    [Abstract] [Full Text] [Related]

  • 9. Validation of an automated procedure for the prediction of relative free energies of binding on a set of aldose reductase inhibitors.
    Ferrari AM, Degliesposti G, Sgobba M, Rastelli G.
    Bioorg Med Chem; 2007 Dec 15; 15(24):7865-77. PubMed ID: 17870536
    [Abstract] [Full Text] [Related]

  • 10. On the mechanism of action of 9-O-arylalkyloxime derivatives of 6-O-mycaminosyltylonolide, a new class of 16-membered macrolide antibiotics.
    Karahalios P, Kalpaxis DL, Fu H, Katz L, Wilson DN, Dinos GP.
    Mol Pharmacol; 2006 Oct 15; 70(4):1271-80. PubMed ID: 16873579
    [Abstract] [Full Text] [Related]

  • 11. Structure-activity relationships for three macrolide antibiotics in Haemophilus influenzae.
    Mabe S, Eller J, Champney WS.
    Curr Microbiol; 2004 Oct 15; 49(4):248-54. PubMed ID: 15386112
    [Abstract] [Full Text] [Related]

  • 12. Interplay between the ribosomal tunnel, nascent chain, and macrolides influences drug inhibition.
    Starosta AL, Karpenko VV, Shishkina AV, Mikolajka A, Sumbatyan NV, Schluenzen F, Korshunova GA, Bogdanov AA, Wilson DN.
    Chem Biol; 2010 May 28; 17(5):504-14. PubMed ID: 20534348
    [Abstract] [Full Text] [Related]

  • 13. Binding of antifusion peptides with HIVgp41 from molecular dynamics simulations: quantitative correlation with experiment.
    Strockbine B, Rizzo RC.
    Proteins; 2007 May 15; 67(3):630-42. PubMed ID: 17335007
    [Abstract] [Full Text] [Related]

  • 14. Computational alanine scanning and free energy decomposition for E. coli type I signal peptidase with lipopeptide inhibitor complex.
    Li T, Froeyen M, Herdewijn P.
    J Mol Graph Model; 2008 Jan 15; 26(5):813-23. PubMed ID: 17532654
    [Abstract] [Full Text] [Related]

  • 15. Free energy calculations for theophylline binding to an RNA aptamer: Comparison of MM-PBSA and thermodynamic integration methods.
    Gouda H, Kuntz ID, Case DA, Kollman PA.
    Biopolymers; 2003 Jan 15; 68(1):16-34. PubMed ID: 12579577
    [Abstract] [Full Text] [Related]

  • 16. Evaluating the molecular mechanics poisson-boltzmann surface area free energy method using a congeneric series of ligands to p38 MAP kinase.
    Pearlman DA.
    J Med Chem; 2005 Dec 01; 48(24):7796-807. PubMed ID: 16302819
    [Abstract] [Full Text] [Related]

  • 17. The structure of ribosome-lankacidin complex reveals ribosomal sites for synergistic antibiotics.
    Auerbach T, Mermershtain I, Davidovich C, Bashan A, Belousoff M, Wekselman I, Zimmerman E, Xiong L, Klepacki D, Arakawa K, Kinashi H, Mankin AS, Yonath A.
    Proc Natl Acad Sci U S A; 2010 Feb 02; 107(5):1983-8. PubMed ID: 20080686
    [Abstract] [Full Text] [Related]

  • 18. Molecular dynamics simulations of the TEM-1 beta-lactamase complexed with cephalothin.
    Díaz N, Suárez D, Merz KM, Sordo TL.
    J Med Chem; 2005 Feb 10; 48(3):780-91. PubMed ID: 15689162
    [Abstract] [Full Text] [Related]

  • 19. Calculation of the standard binding free energy of sparsomycin to the ribosomal peptidyl-transferase P-site using molecular dynamics simulations with restraining potentials.
    Ge X, Roux B.
    J Mol Recognit; 2010 Feb 10; 23(2):128-41. PubMed ID: 20151411
    [Abstract] [Full Text] [Related]

  • 20. Solution conformation of methylated macrolide antibiotics roxithromycin and erythromycin using NMR and molecular modelling. Ribosome-bound conformation determined by TRNOE and formation of cytochrome P450-metabolite complex.
    Bertho G, Ladam P, Gharbi-Benarous J, Delaforge M, Girault JP.
    Int J Biol Macromol; 1998 Apr 10; 22(2):103-27. PubMed ID: 9585888
    [Abstract] [Full Text] [Related]

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