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Journal Abstract Search

258 related items for PubMed ID: 19477996

  • 1. IsoRankN: spectral methods for global alignment of multiple protein networks.
    Liao CS, Lu K, Baym M, Singh R, Berger B.
    Bioinformatics; 2009 Jun 15; 25(12):i253-8. PubMed ID: 19477996
    [Abstract] [Full Text] [Related]

  • 2. Global alignment of protein-protein interaction networks by graph matching methods.
    Zaslavskiy M, Bach F, Vert JP.
    Bioinformatics; 2009 Jun 15; 25(12):i259-67. PubMed ID: 19477997
    [Abstract] [Full Text] [Related]

  • 3. Optimizing a global alignment of protein interaction networks.
    Chindelevitch L, Ma CY, Liao CS, Berger B.
    Bioinformatics; 2013 Nov 01; 29(21):2765-73. PubMed ID: 24048352
    [Abstract] [Full Text] [Related]

  • 4. L-GRAAL: Lagrangian graphlet-based network aligner.
    Malod-Dognin N, Pržulj N.
    Bioinformatics; 2015 Jul 01; 31(13):2182-9. PubMed ID: 25725498
    [Abstract] [Full Text] [Related]

  • 5. Scalable global alignment for multiple biological networks.
    Shih YK, Parthasarathy S.
    BMC Bioinformatics; 2012 Mar 21; 13 Suppl 3(Suppl 3):S11. PubMed ID: 22536895
    [Abstract] [Full Text] [Related]

  • 6. Fuse: multiple network alignment via data fusion.
    Gligorijević V, Malod-Dognin N, Pržulj N.
    Bioinformatics; 2016 Apr 15; 32(8):1195-203. PubMed ID: 26668003
    [Abstract] [Full Text] [Related]

  • 7. NetCoffee: a fast and accurate global alignment approach to identify functionally conserved proteins in multiple networks.
    Hu J, Kehr B, Reinert K.
    Bioinformatics; 2014 Feb 15; 30(4):540-8. PubMed ID: 24336806
    [Abstract] [Full Text] [Related]

  • 8. A new graph-based method for pairwise global network alignment.
    Klau GW.
    BMC Bioinformatics; 2009 Jan 30; 10 Suppl 1(Suppl 1):S59. PubMed ID: 19208162
    [Abstract] [Full Text] [Related]

  • 9. Approximate IsoRank for Scalable and Functionally Meaningful Cross-Species Alignments of Protein Interaction Networks.
    Devkota K, Blumer A, Hu X, Cowen L.
    J Comput Biol; 2024 Oct 30; 31(10):990-1007. PubMed ID: 39320345
    [Abstract] [Full Text] [Related]

  • 10. Functionally guided alignment of protein interaction networks for module detection.
    Ali W, Deane CM.
    Bioinformatics; 2009 Dec 01; 25(23):3166-73. PubMed ID: 19797409
    [Abstract] [Full Text] [Related]

  • 11. INDEX: Incremental depth extension approach for protein-protein interaction networks alignment.
    Mir A, Naghibzadeh M, Saadati N.
    Biosystems; 2017 Dec 01; 162():24-34. PubMed ID: 28860070
    [Abstract] [Full Text] [Related]

  • 12. GraphCrunch 2: Software tool for network modeling, alignment and clustering.
    Kuchaiev O, Stevanović A, Hayes W, Pržulj N.
    BMC Bioinformatics; 2011 Jan 19; 12():24. PubMed ID: 21244715
    [Abstract] [Full Text] [Related]

  • 13. C-GRAAL: common-neighbors-based global GRAph ALignment of biological networks.
    Memišević V, Pržulj N.
    Integr Biol (Camb); 2012 Jul 19; 4(7):734-43. PubMed ID: 22234340
    [Abstract] [Full Text] [Related]

  • 14. Domain-oriented edge-based alignment of protein interaction networks.
    Guo X, Hartemink AJ.
    Bioinformatics; 2009 Jun 15; 25(12):i240-6. PubMed ID: 19477994
    [Abstract] [Full Text] [Related]

  • 15. MAGNA: Maximizing Accuracy in Global Network Alignment.
    Saraph V, Milenković T.
    Bioinformatics; 2014 Oct 15; 30(20):2931-40. PubMed ID: 25015987
    [Abstract] [Full Text] [Related]

  • 16. Global multiple protein-protein interaction network alignment by combining pairwise network alignments.
    Dohrmann J, Puchin J, Singh R.
    BMC Bioinformatics; 2015 Oct 15; 16 Suppl 13(Suppl 13):S11. PubMed ID: 26423128
    [Abstract] [Full Text] [Related]

  • 17. Multiple Network Alignment via MultiMAGNA+.
    Vijayan V, Milenkovic T.
    IEEE/ACM Trans Comput Biol Bioinform; 2018 Oct 15; 15(5):1669-1682. PubMed ID: 28829315
    [Abstract] [Full Text] [Related]

  • 18. LocalAli: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks.
    Hu J, Reinert K.
    Bioinformatics; 2015 Feb 01; 31(3):363-72. PubMed ID: 25282642
    [Abstract] [Full Text] [Related]

  • 19. SiPAN: simultaneous prediction and alignment of protein-protein interaction networks.
    Alkan F, Erten C.
    Bioinformatics; 2015 Jul 15; 31(14):2356-63. PubMed ID: 25788620
    [Abstract] [Full Text] [Related]

  • 20. NETAL: a new graph-based method for global alignment of protein-protein interaction networks.
    Neyshabur B, Khadem A, Hashemifar S, Arab SS.
    Bioinformatics; 2013 Jul 01; 29(13):1654-62. PubMed ID: 23696650
    [Abstract] [Full Text] [Related]

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