These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

125 related items for PubMed ID: 19499554

  • 1. The thermodynamic influence of trapped water molecules on a protein-ligand interaction.
    Stegmann CM, Seeliger D, Sheldrick GM, de Groot BL, Wahl MC.
    Angew Chem Int Ed Engl; 2009; 48(28):5207-10. PubMed ID: 19499554
    [Abstract] [Full Text] [Related]

  • 2. Thermodynamics of buried water clusters at a protein-ligand binding interface.
    Li Z, Lazaridis T.
    J Phys Chem B; 2006 Jan 26; 110(3):1464-75. PubMed ID: 16471698
    [Abstract] [Full Text] [Related]

  • 3. Structure of cyclophilin from Leishmania donovani bound to cyclosporin at 2.6 A resolution: correlation between structure and thermodynamic data.
    Venugopal V, Datta AK, Bhattacharyya D, Dasgupta D, Banerjee R.
    Acta Crystallogr D Biol Crystallogr; 2009 Nov 26; 65(Pt 11):1187-95. PubMed ID: 19923714
    [Abstract] [Full Text] [Related]

  • 4. Enzymatic and structural characterization of non-peptide ligand-cyclophilin complexes.
    Kontopidis G, Taylor P, Walkinshaw MD.
    Acta Crystallogr D Biol Crystallogr; 2004 Mar 26; 60(Pt 3):479-85. PubMed ID: 14993672
    [Abstract] [Full Text] [Related]

  • 5. Crystal structure of human cyclophilin D in complex with its inhibitor, cyclosporin A at 0.96-A resolution.
    Kajitani K, Fujihashi M, Kobayashi Y, Shimizu S, Tsujimoto Y, Miki K.
    Proteins; 2008 Mar 26; 70(4):1635-9. PubMed ID: 18076075
    [No Abstract] [Full Text] [Related]

  • 6. Analysis of ligand-bound water molecules in high-resolution crystal structures of protein-ligand complexes.
    Lu Y, Wang R, Yang CY, Wang S.
    J Chem Inf Model; 2007 Mar 26; 47(2):668-75. PubMed ID: 17266298
    [Abstract] [Full Text] [Related]

  • 7. Modelling and study of cyclosporin A and related compounds in complexes with a Trypanosoma cruzi cyclophilin.
    Carraro R, Búa J, Ruiz A, Paulino M.
    J Mol Graph Model; 2007 Jul 26; 26(1):48-61. PubMed ID: 17174582
    [Abstract] [Full Text] [Related]

  • 8. Catalytic mechanism of cyclophilin as observed in molecular dynamics simulations: pathway prediction and reconciliation of X-ray crystallographic and NMR solution data.
    Trzesniak D, van Gunsteren WF.
    Protein Sci; 2006 Nov 26; 15(11):2544-51. PubMed ID: 17075133
    [Abstract] [Full Text] [Related]

  • 9. Mapping the energetics of water-protein and water-ligand interactions with the "natural" HINT forcefield: predictive tools for characterizing the roles of water in biomolecules.
    Amadasi A, Spyrakis F, Cozzini P, Abraham DJ, Kellogg GE, Mozzarelli A.
    J Mol Biol; 2006 Apr 21; 358(1):289-309. PubMed ID: 16497327
    [Abstract] [Full Text] [Related]

  • 10. Carbohydrate-binding proteins: Dissecting ligand structures through solvent environment occupancy.
    Gauto DF, Di Lella S, Guardia CM, Estrin DA, Martí MA.
    J Phys Chem B; 2009 Jun 25; 113(25):8717-24. PubMed ID: 19485380
    [Abstract] [Full Text] [Related]

  • 11. The crystal structure of human WD40 repeat-containing peptidylprolyl isomerase (PPWD1).
    Davis TL, Walker JR, Ouyang H, MacKenzie F, Butler-Cole C, Newman EM, Eisenmesser EZ, Dhe-Paganon S.
    FEBS J; 2008 May 25; 275(9):2283-95. PubMed ID: 18397323
    [Abstract] [Full Text] [Related]

  • 12. Water makes the difference: rearrangement of water solvation layer triggers non-additivity of functional group contributions in protein-ligand binding.
    Biela A, Betz M, Heine A, Klebe G.
    ChemMedChem; 2012 Aug 25; 7(8):1423-34. PubMed ID: 22733601
    [Abstract] [Full Text] [Related]

  • 13. 1.88 A crystal structure of the C domain of hCyP33: a novel domain of peptidyl-prolyl cis-trans isomerase.
    Wang T, Yun CH, Gu SY, Chang WR, Liang DC.
    Biochem Biophys Res Commun; 2005 Aug 05; 333(3):845-9. PubMed ID: 15963461
    [Abstract] [Full Text] [Related]

  • 14. Crystal water dynamics of guanosine dihydrate: analysis of atomic displacement parameters, time profile of hydrogen-bonding probability, and translocation of water by MD simulation.
    Yoneda S, Sugawara Y, Urabe H.
    J Phys Chem B; 2005 Jan 27; 109(3):1304-12. PubMed ID: 16851095
    [Abstract] [Full Text] [Related]

  • 15. Accounting for solvent in structure-based drug design.
    Tari LW.
    Methods Mol Biol; 2012 Jan 27; 841():251-66. PubMed ID: 22222456
    [Abstract] [Full Text] [Related]

  • 16. Characterization of the galectin-1 carbohydrate recognition domain in terms of solvent occupancy.
    Di Lella S, Martí MA, Alvarez RM, Estrin DA, Ricci JC.
    J Phys Chem B; 2007 Jun 28; 111(25):7360-6. PubMed ID: 17523619
    [Abstract] [Full Text] [Related]

  • 17. Structural and functional role of water molecules in bovine pancreatic phospholipase A(2): a data-mining approach.
    Kanaujia SP, Sekar K.
    Acta Crystallogr D Biol Crystallogr; 2009 Jan 28; 65(Pt 1):74-84. PubMed ID: 19153469
    [Abstract] [Full Text] [Related]

  • 18. Water at biomolecular binding interfaces.
    Li Z, Lazaridis T.
    Phys Chem Chem Phys; 2007 Feb 07; 9(5):573-81. PubMed ID: 17242738
    [Abstract] [Full Text] [Related]

  • 19. Thermodynamic characterization of the interaction of human cyclophilin 18 with cyclosporin A.
    Fanghänel J, Fischer G.
    Biophys Chem; 2003 Feb 07; 100(1-3):351-66. PubMed ID: 12646377
    [Abstract] [Full Text] [Related]

  • 20. Think twice: understanding the high potency of bis(phenyl)methane inhibitors of thrombin.
    Baum B, Muley L, Heine A, Smolinski M, Hangauer D, Klebe G.
    J Mol Biol; 2009 Aug 21; 391(3):552-64. PubMed ID: 19520086
    [Abstract] [Full Text] [Related]

    Page: [Next] [New Search]
    of 7.