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Journal Abstract Search

365 related items for PubMed ID: 19523228

  • 1. Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing.
    Mane SP, Evans C, Cooper KL, Crasta OR, Folkerts O, Hutchison SK, Harkins TT, Thierry-Mieg D, Thierry-Mieg J, Jensen RV.
    BMC Genomics; 2009 Jun 12; 10():264. PubMed ID: 19523228
    [Abstract] [Full Text] [Related]

  • 2. Evaluation of gene expression data generated from expired Affymetrix GeneChip® microarrays using MAQC reference RNA samples.
    Wen Z, Wang C, Shi Q, Huang Y, Su Z, Hong H, Tong W, Shi L.
    BMC Bioinformatics; 2010 Oct 07; 11 Suppl 6(Suppl 6):S10. PubMed ID: 20946593
    [Abstract] [Full Text] [Related]

  • 3. Differentially expressed alternatively spliced genes in malignant pleural mesothelioma identified using massively parallel transcriptome sequencing.
    Dong L, Jensen RV, De Rienzo A, Gordon GJ, Xu Y, Sugarbaker DJ, Bueno R.
    BMC Med Genet; 2009 Dec 31; 10():149. PubMed ID: 20043850
    [Abstract] [Full Text] [Related]

  • 4. Cross-platform comparison of SYBR Green real-time PCR with TaqMan PCR, microarrays and other gene expression measurement technologies evaluated in the MicroArray Quality Control (MAQC) study.
    Arikawa E, Sun Y, Wang J, Zhou Q, Ning B, Dial SL, Guo L, Yang J.
    BMC Genomics; 2008 Jul 11; 9():328. PubMed ID: 18620571
    [Abstract] [Full Text] [Related]

  • 5. 3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer.
    Asmann YW, Klee EW, Thompson EA, Perez EA, Middha S, Oberg AL, Therneau TM, Smith DI, Poland GA, Wieben ED, Kocher JP.
    BMC Genomics; 2009 Nov 16; 10():531. PubMed ID: 19917133
    [Abstract] [Full Text] [Related]

  • 6. Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data.
    Chen JJ, Hsueh HM, Delongchamp RR, Lin CJ, Tsai CA.
    BMC Bioinformatics; 2007 Oct 25; 8():412. PubMed ID: 17961233
    [Abstract] [Full Text] [Related]

  • 7. Comparison of next generation sequencing technologies for transcriptome characterization.
    Wall PK, Leebens-Mack J, Chanderbali AS, Barakat A, Wolcott E, Liang H, Landherr L, Tomsho LP, Hu Y, Carlson JE, Ma H, Schuster SC, Soltis DE, Soltis PS, Altman N, dePamphilis CW.
    BMC Genomics; 2009 Aug 01; 10():347. PubMed ID: 19646272
    [Abstract] [Full Text] [Related]

  • 8. Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome.
    Fraser BA, Weadick CJ, Janowitz I, Rodd FH, Hughes KA.
    BMC Genomics; 2011 Apr 20; 12():202. PubMed ID: 21507250
    [Abstract] [Full Text] [Related]

  • 9. Gene set enrichment meta-learning analysis: next- generation sequencing versus microarrays.
    Stiglic G, Bajgot M, Kokol P.
    BMC Bioinformatics; 2010 Apr 08; 11():176. PubMed ID: 20377890
    [Abstract] [Full Text] [Related]

  • 10. An optimized protocol for generation and analysis of Ion Proton sequencing reads for RNA-Seq.
    Yuan Y, Xu H, Leung RK.
    BMC Genomics; 2016 May 26; 17():403. PubMed ID: 27229683
    [Abstract] [Full Text] [Related]

  • 11. RNA-Seq: a method for comprehensive transcriptome analysis.
    Nagalakshmi U, Waern K, Snyder M.
    Curr Protoc Mol Biol; 2010 Jan 26; Chapter 4():Unit 4.11.1-13. PubMed ID: 20069539
    [Abstract] [Full Text] [Related]

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  • 14. Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays.
    Bottomly D, Walter NA, Hunter JE, Darakjian P, Kawane S, Buck KJ, Searles RP, Mooney M, McWeeney SK, Hitzemann R.
    PLoS One; 2011 Mar 24; 6(3):e17820. PubMed ID: 21455293
    [Abstract] [Full Text] [Related]

  • 15. On the importance of small changes in RNA expression.
    St Laurent G, Shtokalo D, Tackett MR, Yang Z, Vyatkin Y, Milos PM, Seilheimer B, McCaffrey TA, Kapranov P.
    Methods; 2013 Sep 01; 63(1):18-24. PubMed ID: 23563143
    [Abstract] [Full Text] [Related]

  • 16. Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples.
    Nacu S, Yuan W, Kan Z, Bhatt D, Rivers CS, Stinson J, Peters BA, Modrusan Z, Jung K, Seshagiri S, Wu TD.
    BMC Med Genomics; 2011 Jan 24; 4():11. PubMed ID: 21261984
    [Abstract] [Full Text] [Related]

  • 17. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK, Scholz MB, Teal TK, Abramovitch RB.
    BMC Bioinformatics; 2016 Feb 04; 17():66. PubMed ID: 26847232
    [Abstract] [Full Text] [Related]

  • 18. Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research.
    Seok J, Xu W, Jiang H, Davis RW, Xiao W.
    PLoS One; 2012 Feb 04; 7(2):e31440. PubMed ID: 22312447
    [Abstract] [Full Text] [Related]

  • 19. Gene expression and isoform variation analysis using Affymetrix Exon Arrays.
    Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.
    BMC Genomics; 2008 Nov 07; 9():529. PubMed ID: 18990248
    [Abstract] [Full Text] [Related]

  • 20. JAGuaR: junction alignments to genome for RNA-seq reads.
    Butterfield YS, Kreitzman M, Thiessen N, Corbett RD, Li Y, Pang J, Ma YP, Jones SJ, Birol İ.
    PLoS One; 2014 Nov 07; 9(7):e102398. PubMed ID: 25062255
    [Abstract] [Full Text] [Related]

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