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Journal Abstract Search

179 related items for PubMed ID: 19528069

  • 1. MaXIC-Q Web: a fully automated web service using statistical and computational methods for protein quantitation based on stable isotope labeling and LC-MS.
    Tsou CC, Tsui YH, Yian YH, Chen YJ, Yang HY, Yu CY, Lynn KS, Chen YJ, Sung TY, Hsu WL.
    Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W661-9. PubMed ID: 19528069
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  • 5. Multi-Q: a fully automated tool for multiplexed protein quantitation.
    Lin WT, Hung WN, Yian YH, Wu KP, Han CL, Chen YR, Chen YJ, Sung TY, Hsu WL.
    J Proteome Res; 2006 Sep; 5(9):2328-38. PubMed ID: 16944945
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  • 6. Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endothelial cells.
    Bouyssié D, Gonzalez de Peredo A, Mouton E, Albigot R, Roussel L, Ortega N, Cayrol C, Burlet-Schiltz O, Girard JP, Monsarrat B.
    Mol Cell Proteomics; 2007 Sep; 6(9):1621-37. PubMed ID: 17533220
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  • 7. iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND Algorithm.
    Chang HY, Chen CT, Ko CL, Chen YJ, Chen YJ, Hsu WL, Juo CG, Sung TY.
    Anal Chem; 2017 Dec 19; 89(24):13128-13136. PubMed ID: 29165996
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  • 10. Fully automated software solution for protein quantitation by global metabolic labeling with stable isotopes.
    Bindschedler LV, Cramer R.
    Rapid Commun Mass Spectrom; 2011 Jun 15; 25(11):1461-71. PubMed ID: 21594918
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  • 11. Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.
    Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD.
    BMC Bioinformatics; 2008 Dec 16; 9():542. PubMed ID: 19087345
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  • 12. Improving quantitation accuracy in isobaric-labeling mass spectrometry experiments with spectral library searching and feature-based peptide-spectrum match filter.
    Kuo TY, Wang JH, Huang YW, Sung TY, Chen CT.
    Sci Rep; 2023 Aug 29; 13(1):14119. PubMed ID: 37644119
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  • 14. Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective.
    Perez-Riverol Y, Wang R, Hermjakob H, Müller M, Vesada V, Vizcaíno JA.
    Biochim Biophys Acta; 2014 Jan 29; 1844(1 Pt A):63-76. PubMed ID: 23467006
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  • 15. The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: I. Statistically annotated datasets for peptide sequences and proteins identified via the application of ICAT and tandem mass spectrometry to proteins copurifying with T cell lipid rafts.
    von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD.
    Mol Cell Proteomics; 2003 Jul 29; 2(7):426-7. PubMed ID: 12832456
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  • 16. The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation.
    von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD.
    Mol Cell Proteomics; 2003 Jul 29; 2(7):428-42. PubMed ID: 12832459
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  • 20. Envelope: interactive software for modeling and fitting complex isotope distributions.
    Sykes MT, Williamson JR.
    BMC Bioinformatics; 2008 Oct 20; 9():446. PubMed ID: 18937869
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