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343 related items for PubMed ID: 19579235

  • 1. Position-dependent effects of fluorinated amino acids on the hydrophobic core formation of a heterodimeric coiled coil.
    Salwiczek M, Samsonov S, Vagt T, Nyakatura E, Fleige E, Numata J, Cölfen H, Pisabarro MT, Koksch B.
    Chemistry; 2009 Aug 03; 15(31):7628-36. PubMed ID: 19579235
    [Abstract] [Full Text] [Related]

  • 2. Effects of side-chain characteristics on stability and oligomerization state of a de novo-designed model coiled-coil: 20 amino acid substitutions in position "d".
    Tripet B, Wagschal K, Lavigne P, Mant CT, Hodges RS.
    J Mol Biol; 2000 Jul 07; 300(2):377-402. PubMed ID: 10873472
    [Abstract] [Full Text] [Related]

  • 3. Towards identifying preferred interaction partners of fluorinated amino acids within the hydrophobic environment of a dimeric coiled coil peptide.
    Vagt T, Nyakatura E, Salwiczek M, Jäckel C, Koksch B.
    Org Biomol Chem; 2010 Mar 21; 8(6):1382-6. PubMed ID: 20204211
    [Abstract] [Full Text] [Related]

  • 4. Characteristic features of amino acid residues in coiled-coil protein structures.
    Gromiha MM, Parry DA.
    Biophys Chem; 2004 Oct 01; 111(2):95-103. PubMed ID: 15381307
    [Abstract] [Full Text] [Related]

  • 5. Optimization of aromatic side chain size complementarity in the hydrophobic core of a designed coiled-coil.
    Sakurai Y, Mizuno T, Hiroaki H, Oku JI, Tanaka T.
    J Pept Res; 2005 Dec 01; 66(6):387-94. PubMed ID: 16316455
    [Abstract] [Full Text] [Related]

  • 6. An antiparallel alpha-helical coiled-coil model system for rapid assessment of side-chain recognition at the hydrophobic interface.
    Hadley EB, Gellman SH.
    J Am Chem Soc; 2006 Dec 27; 128(51):16444-5. PubMed ID: 17177361
    [Abstract] [Full Text] [Related]

  • 7. Real-time monitoring of the interactions of two-stranded de novo designed coiled-coils: effect of chain length on the kinetic and thermodynamic constants of binding.
    De Crescenzo G, Litowski JR, Hodges RS, O'Connor-McCourt MD.
    Biochemistry; 2003 Feb 18; 42(6):1754-63. PubMed ID: 12578390
    [Abstract] [Full Text] [Related]

  • 8. Theoretical calculation of the coiled-coil stability in water in the context of its possible use as a molecular rack.
    Orzechowski M, Cieplak P, Piela L.
    J Comput Chem; 2002 Jan 15; 23(1):106-10. PubMed ID: 11913375
    [Abstract] [Full Text] [Related]

  • 9. Fluorine in protein environments: a QM and MD study.
    Samsonov SA, Salwiczek M, Anders G, Koksch B, Pisabarro MT.
    J Phys Chem B; 2009 Dec 24; 113(51):16400-8. PubMed ID: 19947631
    [Abstract] [Full Text] [Related]

  • 10. Relative importance of secondary structure and solvent accessibility to the stability of protein mutants. A case study with amino acid properties and energetics on T4 and human lysozymes.
    Saraboji K, Gromiha MM, Ponnuswamy MN.
    Comput Biol Chem; 2005 Feb 24; 29(1):25-35. PubMed ID: 15680583
    [Abstract] [Full Text] [Related]

  • 11. Fine structure analysis of a protein folding transition state; distinguishing between hydrophobic stabilization and specific packing.
    Anil B, Sato S, Cho JH, Raleigh DP.
    J Mol Biol; 2005 Dec 02; 354(3):693-705. PubMed ID: 16246369
    [Abstract] [Full Text] [Related]

  • 12. A parallel coiled-coil tetramer with offset helices.
    Liu J, Deng Y, Zheng Q, Cheng CS, Kallenbach NR, Lu M.
    Biochemistry; 2006 Dec 26; 45(51):15224-31. PubMed ID: 17176044
    [Abstract] [Full Text] [Related]

  • 13. Effects of bulkiness and hydrophobicity of an aliphatic amino acid in the recognition helix of the GAGA zinc finger on the stability of the hydrophobic core and DNA binding affinity.
    Dhanasekaran M, Negi S, Imanishi M, Suzuki M, Sugiura Y.
    Biochemistry; 2008 Nov 11; 47(45):11717-24. PubMed ID: 18855425
    [Abstract] [Full Text] [Related]

  • 14. Establishing Fluorine-Containing Amino Acids as an Orthogonal Tool in Coiled Coil Assembly.
    Hohmann T, Dubatouka P, Pfeifer K, Koksch B.
    Biomacromolecules; 2023 Jul 10; 24(7):3357-3369. PubMed ID: 37379337
    [Abstract] [Full Text] [Related]

  • 15. Fluorinated amino acids: compatibility with native protein structures and effects on protein-protein interactions.
    Salwiczek M, Nyakatura EK, Gerling UI, Ye S, Koksch B.
    Chem Soc Rev; 2012 Mar 21; 41(6):2135-71. PubMed ID: 22130572
    [Abstract] [Full Text] [Related]

  • 16. Organic ligand binding by a hydrophobic cavity in a designed tetrameric coiled-coil protein.
    Mizuno T, Hasegawa C, Tanabe Y, Hamajima K, Muto T, Nishi Y, Oda M, Kobayashi Y, Tanaka T.
    Chemistry; 2009 Mar 21; 15(6):1491-8. PubMed ID: 19115294
    [Abstract] [Full Text] [Related]

  • 17. Selection of a buried salt bridge by phage display.
    Vagt T, Jäckel C, Samsonov S, Teresa Pisabarro M, Koksch B.
    Bioorg Med Chem Lett; 2009 Jul 15; 19(14):3924-7. PubMed ID: 19369078
    [Abstract] [Full Text] [Related]

  • 18. Core residue replacements cause coiled-coil orientation switching in vitro and in vivo: structure-function correlations for osmosensory transporter ProP.
    Tsatskis Y, Kwok SC, Becker E, Gill C, Smith MN, Keates RA, Hodges RS, Wood JM.
    Biochemistry; 2008 Jan 08; 47(1):60-72. PubMed ID: 18076193
    [Abstract] [Full Text] [Related]

  • 19. Engineering protein stability and specificity using fluorous amino acids: the importance of packing effects.
    Buer BC, de la Salud-Bea R, Al Hashimi HM, Marsh EN.
    Biochemistry; 2009 Nov 17; 48(45):10810-7. PubMed ID: 19824630
    [Abstract] [Full Text] [Related]

  • 20. Design and application of basic amino acids displaying enhanced hydrophobicity.
    Kretsinger JK, Schneider JP.
    J Am Chem Soc; 2003 Jul 02; 125(26):7907-13. PubMed ID: 12823011
    [Abstract] [Full Text] [Related]

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