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Journal Abstract Search

426 related items for PubMed ID: 19606824

  • 1. Dynamic linear response theory for conformational relaxation of proteins.
    Essiz SG, Coalson RD.
    J Phys Chem B; 2009 Aug 06; 113(31):10859-69. PubMed ID: 19606824
    [Abstract] [Full Text] [Related]

  • 2. Modeling protein-small molecule interactions: structure and thermodynamics of noble gases binding in a cavity in mutant phage T4 lysozyme L99A.
    Mann G, Hermans J.
    J Mol Biol; 2000 Sep 29; 302(4):979-89. PubMed ID: 10993736
    [Abstract] [Full Text] [Related]

  • 3. Response of rotation-translation blocked proteins using Langevin dynamics on a locally harmonic landscape.
    Manson AC, Coalson RD.
    J Phys Chem B; 2012 Oct 11; 116(40):12142-58. PubMed ID: 22924611
    [Abstract] [Full Text] [Related]

  • 4. Linear response theory in dihedral angle space for protein structural change upon ligand binding.
    Omori S, Fuchigami S, Ikeguchi M, Kidera A.
    J Comput Chem; 2009 Dec 11; 30(16):2602-8. PubMed ID: 19373827
    [Abstract] [Full Text] [Related]

  • 5. Nonequilibrium, multiple-timescale simulations of ligand-receptor interactions in structured protein systems.
    Zhang Y, Peters MH, Li Y.
    Proteins; 2003 Aug 15; 52(3):339-48. PubMed ID: 12866048
    [Abstract] [Full Text] [Related]

  • 6. Atomic force microscopy: determination of unbinding force, off rate and energy barrier for protein-ligand interaction.
    Lee CK, Wang YM, Huang LS, Lin S.
    Micron; 2007 Aug 15; 38(5):446-61. PubMed ID: 17015017
    [Abstract] [Full Text] [Related]

  • 7. Selected-fit versus induced-fit protein binding: kinetic differences and mutational analysis.
    Weikl TR, von Deuster C.
    Proteins; 2009 Apr 15; 75(1):104-10. PubMed ID: 18798570
    [Abstract] [Full Text] [Related]

  • 8. Fragment-based computation of binding free energies by systematic sampling.
    Clark M, Meshkat S, Talbot GT, Carnevali P, Wiseman JS.
    J Chem Inf Model; 2009 Aug 15; 49(8):1901-13. PubMed ID: 19610599
    [Abstract] [Full Text] [Related]

  • 9. Size versus polarizability in protein-ligand interactions: binding of noble gases within engineered cavities in phage T4 lysozyme.
    Quillin ML, Breyer WA, Griswold IJ, Matthews BW.
    J Mol Biol; 2000 Sep 29; 302(4):955-77. PubMed ID: 10993735
    [Abstract] [Full Text] [Related]

  • 10. Calculation of absolute protein-ligand binding free energy using distributed replica sampling.
    Rodinger T, Howell PL, Pomès R.
    J Chem Phys; 2008 Oct 21; 129(15):155102. PubMed ID: 19045232
    [Abstract] [Full Text] [Related]

  • 11. Atomistic simulation combined with analytic theory to study the response of the P-selectin/PSGL-1 complex to an external force.
    Gunnerson KN, Pereverzev YV, Prezhdo OV.
    J Phys Chem B; 2009 Feb 19; 113(7):2090-100. PubMed ID: 19178163
    [Abstract] [Full Text] [Related]

  • 12. An evaluation of implicit and explicit solvent model systems for the molecular dynamics simulation of bacteriophage T4 lysozyme.
    Arnold GE, Ornstein RL.
    Proteins; 1994 Jan 19; 18(1):19-33. PubMed ID: 8146120
    [Abstract] [Full Text] [Related]

  • 13. Protein dynamic studies move to a new time slot.
    Cavanagh J, Venters RA.
    Nat Struct Biol; 2001 Nov 19; 8(11):912-4. PubMed ID: 11685230
    [No Abstract] [Full Text] [Related]

  • 14. Computer simulations and theory of protein translocation.
    Makarov DE.
    Acc Chem Res; 2009 Feb 17; 42(2):281-9. PubMed ID: 19072704
    [Abstract] [Full Text] [Related]

  • 15. Grand canonical Monte Carlo simulation of ligand-protein binding.
    Clark M, Guarnieri F, Shkurko I, Wiseman J.
    J Chem Inf Model; 2006 Feb 17; 46(1):231-42. PubMed ID: 16426059
    [Abstract] [Full Text] [Related]

  • 16. New-generation amber united-atom force field.
    Yang L, Tan CH, Hsieh MJ, Wang J, Duan Y, Cieplak P, Caldwell J, Kollman PA, Luo R.
    J Phys Chem B; 2006 Jul 06; 110(26):13166-76. PubMed ID: 16805629
    [Abstract] [Full Text] [Related]

  • 17. Studying excited states of proteins by NMR spectroscopy.
    Mulder FA, Mittermaier A, Hon B, Dahlquist FW, Kay LE.
    Nat Struct Biol; 2001 Nov 06; 8(11):932-5. PubMed ID: 11685237
    [Abstract] [Full Text] [Related]

  • 18. Transform and relax sampling for highly anisotropic systems: application to protein domain motion and folding.
    Kitao A.
    J Chem Phys; 2011 Jul 28; 135(4):045101. PubMed ID: 21806159
    [Abstract] [Full Text] [Related]

  • 19. Theoretical aspects of the biological catch bond.
    Prezhdo OV, Pereverzev YV.
    Acc Chem Res; 2009 Jun 16; 42(6):693-703. PubMed ID: 19331389
    [Abstract] [Full Text] [Related]

  • 20. Revealing time bunching effect in single-molecule enzyme conformational dynamics.
    Lu HP.
    Phys Chem Chem Phys; 2011 Apr 21; 13(15):6734-49. PubMed ID: 21409227
    [Abstract] [Full Text] [Related]

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