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Journal Abstract Search

182 related items for PubMed ID: 19667082

  • 1. PineSAP--sequence alignment and SNP identification pipeline.
    Wegrzyn JL, Lee JM, Liechty J, Neale DB.
    Bioinformatics; 2009 Oct 01; 25(19):2609-10. PubMed ID: 19667082
    [Abstract] [Full Text] [Related]

  • 2. Seq-SNPing: multiple-alignment tool for SNP discovery, SNP ID identification, and RFLP genotyping.
    Chang HW, Chuang LY, Cheng YH, Ho CH, Wen CH, Yang CH.
    OMICS; 2009 Jun 01; 13(3):253-60. PubMed ID: 19514837
    [Abstract] [Full Text] [Related]

  • 3. SNP-PHAGE--High throughput SNP discovery pipeline.
    Matukumalli LK, Grefenstette JJ, Hyten DL, Choi IY, Cregan PB, Van Tassell CP.
    BMC Bioinformatics; 2006 Oct 23; 7():468. PubMed ID: 17059604
    [Abstract] [Full Text] [Related]

  • 4. A beginners guide to SNP calling from high-throughput DNA-sequencing data.
    Altmann A, Weber P, Bader D, Preuss M, Binder EB, Müller-Myhsok B.
    Hum Genet; 2012 Oct 23; 131(10):1541-54. PubMed ID: 22886560
    [Abstract] [Full Text] [Related]

  • 5. The Sequence Alignment/Map format and SAMtools.
    Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup.
    Bioinformatics; 2009 Aug 15; 25(16):2078-9. PubMed ID: 19505943
    [Abstract] [Full Text] [Related]

  • 6. An integrated SNP mining and utilization (ISMU) pipeline for next generation sequencing data.
    Azam S, Rathore A, Shah TM, Telluri M, Amindala B, Ruperao P, Katta MA, Varshney RK.
    PLoS One; 2014 Aug 15; 9(7):e101754. PubMed ID: 25003610
    [Abstract] [Full Text] [Related]

  • 7. MSQT for choosing SNP assays from multiple DNA alignments.
    Warthmann N, Fitz J, Weigel D.
    Bioinformatics; 2007 Oct 15; 23(20):2784-7. PubMed ID: 17785349
    [Abstract] [Full Text] [Related]

  • 8. kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome.
    Gardner SN, Slezak T, Hall BG.
    Bioinformatics; 2015 Sep 01; 31(17):2877-8. PubMed ID: 25913206
    [Abstract] [Full Text] [Related]

  • 9. SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects.
    Dereeper A, Nicolas S, Le Cunff L, Bacilieri R, Doligez A, Peros JP, Ruiz M, This P.
    BMC Bioinformatics; 2011 May 05; 12():134. PubMed ID: 21545712
    [Abstract] [Full Text] [Related]

  • 10. SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.
    Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C.
    Bioinformatics; 2007 Jul 01; 23(13):i387-91. PubMed ID: 17646321
    [Abstract] [Full Text] [Related]

  • 11. Read trimming has minimal effect on bacterial SNP-calling accuracy.
    Bush SJ.
    Microb Genom; 2020 Dec 01; 6(12):. PubMed ID: 33332257
    [Abstract] [Full Text] [Related]

  • 12. Quake: quality-aware detection and correction of sequencing errors.
    Kelley DR, Schatz MC, Salzberg SL.
    Genome Biol; 2010 Dec 01; 11(11):R116. PubMed ID: 21114842
    [Abstract] [Full Text] [Related]

  • 13. An efficient and scalable analysis framework for variant extraction and refinement from population-scale DNA sequence data.
    Jun G, Wing MK, Abecasis GR, Kang HM.
    Genome Res; 2015 Jun 01; 25(6):918-25. PubMed ID: 25883319
    [Abstract] [Full Text] [Related]

  • 14. Application of machine learning in SNP discovery.
    Matukumalli LK, Grefenstette JJ, Hyten DL, Choi IY, Cregan PB, Van Tassell CP.
    BMC Bioinformatics; 2006 Jan 06; 7():4. PubMed ID: 16398931
    [Abstract] [Full Text] [Related]

  • 15. Analysis of high-throughput sequencing data.
    Mane SP, Modise T, Sobral BW.
    Methods Mol Biol; 2011 Jan 06; 678():1-11. PubMed ID: 20931368
    [Abstract] [Full Text] [Related]

  • 16. bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby.
    Etherington GJ, Ramirez-Gonzalez RH, MacLean D.
    Bioinformatics; 2015 Aug 01; 31(15):2565-7. PubMed ID: 25819670
    [Abstract] [Full Text] [Related]

  • 17. Seq4SNPs: new software for retrieval of multiple, accurately annotated DNA sequences, ready formatted for SNP assay design.
    Field HI, Scollen SA, Luccarini C, Baynes C, Morrison J, Dunning AM, Easton DF, Pharoah PD.
    BMC Bioinformatics; 2009 Jun 12; 10():180. PubMed ID: 19523221
    [Abstract] [Full Text] [Related]

  • 18. GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality.
    Wu TD, Reeder J, Lawrence M, Becker G, Brauer MJ.
    Methods Mol Biol; 2016 Jun 12; 1418():283-334. PubMed ID: 27008021
    [Abstract] [Full Text] [Related]

  • 19. TotalReCaller: improved accuracy and performance via integrated alignment and base-calling.
    Menges F, Narzisi G, Mishra B.
    Bioinformatics; 2011 Sep 01; 27(17):2330-7. PubMed ID: 21724593
    [Abstract] [Full Text] [Related]

  • 20. Colorstock, SScolor, Ratón: RNA alignment visualization tools.
    Bendaña YR, Holmes IH.
    Bioinformatics; 2008 Feb 15; 24(4):579-80. PubMed ID: 18218657
    [Abstract] [Full Text] [Related]

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