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548 related items for PubMed ID: 19681609

  • 1. Portability of the GN(R)A hairpin loop motif between RNA and DNA.
    Blose JM, Lloyd KP, Bevilacqua PC.
    Biochemistry; 2009 Sep 22; 48(37):8787-94. PubMed ID: 19681609
    [Abstract] [Full Text] [Related]

  • 2. Contribution of the closing base pair to exceptional stability in RNA tetraloops: roles for molecular mimicry and electrostatic factors.
    Blose JM, Proctor DJ, Veeraraghavan N, Misra VK, Bevilacqua PC.
    J Am Chem Soc; 2009 Jun 24; 131(24):8474-84. PubMed ID: 19476351
    [Abstract] [Full Text] [Related]

  • 3. Evidence that folding of an RNA tetraloop hairpin is less cooperative than its DNA counterpart.
    Moody EM, Feerrar JC, Bevilacqua PC.
    Biochemistry; 2004 Jun 29; 43(25):7992-8. PubMed ID: 15209494
    [Abstract] [Full Text] [Related]

  • 4. Thermodynamic coupling of the loop and stem in unusually stable DNA hairpins closed by CG base pairs.
    Moody EM, Bevilacqua PC.
    J Am Chem Soc; 2003 Feb 26; 125(8):2032-3. PubMed ID: 12590515
    [Abstract] [Full Text] [Related]

  • 5. Sequence dependence of the stability of RNA hairpin molecules with six nucleotide loops.
    Vecenie CJ, Morrow CV, Zyra A, Serra MJ.
    Biochemistry; 2006 Feb 07; 45(5):1400-7. PubMed ID: 16445282
    [Abstract] [Full Text] [Related]

  • 6. A network of heterogeneous hydrogen bonds in GNRA tetraloops.
    Jucker FM, Heus HA, Yip PF, Moors EH, Pardi A.
    J Mol Biol; 1996 Dec 20; 264(5):968-80. PubMed ID: 9000624
    [Abstract] [Full Text] [Related]

  • 7. A novel RNA motif based on the structure of unusually stable 2',5'-linked r(UUCG) loops.
    Denisov AY, Hannoush RN, Gehring K, Damha MJ.
    J Am Chem Soc; 2003 Sep 24; 125(38):11525-31. PubMed ID: 13129354
    [Abstract] [Full Text] [Related]

  • 8. Dynamics and stability of GCAA tetraloops with 2-aminopurine and purine substitutions.
    Sarzynska J, Kulinski T.
    J Biomol Struct Dyn; 2005 Feb 24; 22(4):425-39. PubMed ID: 15588106
    [Abstract] [Full Text] [Related]

  • 9. Stability of RNA hairpins closed by wobble base pairs.
    Giese MR, Betschart K, Dale T, Riley CK, Rowan C, Sprouse KJ, Serra MJ.
    Biochemistry; 1998 Jan 27; 37(4):1094-100. PubMed ID: 9454601
    [Abstract] [Full Text] [Related]

  • 10. Stability of RNA hairpin loops closed by AU base pairs.
    Vecenie CJ, Serra MJ.
    Biochemistry; 2004 Sep 21; 43(37):11813-7. PubMed ID: 15362866
    [Abstract] [Full Text] [Related]

  • 11. Thermal stability, structural features, and B-to-Z transition in DNA tetraloop hairpins as determined by optical spectroscopy in d(CG)(3)T(4)(CG)(3) and d(CG)(3)A(4)(CG)(3) oligodeoxynucleotides.
    Hernández B, Baumruk V, Gouyette C, Ghomi M.
    Biopolymers; 2005 May 21; 78(1):21-34. PubMed ID: 15690428
    [Abstract] [Full Text] [Related]

  • 12. Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix.
    Pley HW, Flaherty KM, McKay DB.
    Nature; 1994 Nov 03; 372(6501):111-3. PubMed ID: 7526219
    [Abstract] [Full Text] [Related]

  • 13. Aminoglycoside binding in the major groove of duplex RNA: the thermodynamic and electrostatic forces that govern recognition.
    Jin E, Katritch V, Olson WK, Kharatisvili M, Abagyan R, Pilch DS.
    J Mol Biol; 2000 Apr 21; 298(1):95-110. PubMed ID: 10756107
    [Abstract] [Full Text] [Related]

  • 14. Folding of a stable DNA motif involves a highly cooperative network of interactions.
    Moody EM, Bevilacqua PC.
    J Am Chem Soc; 2003 Dec 31; 125(52):16285-93. PubMed ID: 14692769
    [Abstract] [Full Text] [Related]

  • 15. Melting studies of short DNA hairpins: influence of loop sequence and adjoining base pair identity on hairpin thermodynamic stability.
    Vallone PM, Paner TM, Hilario J, Lane MJ, Faldasz BD, Benight AS.
    Biopolymers; 1999 Oct 05; 50(4):425-42. PubMed ID: 10423551
    [Abstract] [Full Text] [Related]

  • 16. RNA simulations: probing hairpin unfolding and the dynamics of a GNRA tetraloop.
    Sorin EJ, Engelhardt MA, Herschlag D, Pande VS.
    J Mol Biol; 2002 Apr 05; 317(4):493-506. PubMed ID: 11955005
    [Abstract] [Full Text] [Related]

  • 17. Remarkable morphological variability of a common RNA folding motif: the GNRA tetraloop-receptor interaction.
    Abramovitz DL, Pyle AM.
    J Mol Biol; 1997 Feb 28; 266(3):493-506. PubMed ID: 9067606
    [Abstract] [Full Text] [Related]

  • 18. A test of the model to predict unusually stable RNA hairpin loop stability.
    Dale T, Smith R, Serra MJ.
    RNA; 2000 Apr 28; 6(4):608-15. PubMed ID: 10786851
    [Abstract] [Full Text] [Related]

  • 19. Effect of the number of nucleic acid oligomer charges on the salt dependence of stability (DeltaG 37degrees) and melting temperature (Tm): NLPB analysis of experimental data.
    Shkel IA, Record MT.
    Biochemistry; 2004 Jun 08; 43(22):7090-101. PubMed ID: 15170346
    [Abstract] [Full Text] [Related]

  • 20. Experimental and computational studies of the G[UUCG]C RNA tetraloop.
    Williams DJ, Hall KB.
    J Mol Biol; 2000 Apr 14; 297(5):1045-61. PubMed ID: 10764572
    [Abstract] [Full Text] [Related]

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