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Journal Abstract Search

200 related items for PubMed ID: 19688821

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  • 4. Free-energy function for discriminating the native fold of a protein from misfolded decoys.
    Yasuda S, Yoshidome T, Harano Y, Roth R, Oshima H, Oda K, Sugita Y, Ikeguchi M, Kinoshita M.
    Proteins; 2011 Jul; 79(7):2161-71. PubMed ID: 21557318
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  • 7. Structural stability of proteins in aqueous and nonpolar environments.
    Yasuda S, Oshima H, Kinoshita M.
    J Chem Phys; 2012 Oct 07; 137(13):135103. PubMed ID: 23039615
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  • 8. Hydrophobic potential of mean force as a solvation function for protein structure prediction.
    Lin MS, Fawzi NL, Head-Gordon T.
    Structure; 2007 Jun 07; 15(6):727-40. PubMed ID: 17562319
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  • 10. Distinguishing native conformations of proteins from decoys with an effective free energy estimator based on the OPLS all-atom force field and the Surface Generalized Born solvent model.
    Felts AK, Gallicchio E, Wallqvist A, Levy RM.
    Proteins; 2002 Aug 01; 48(2):404-22. PubMed ID: 12112706
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  • 11. Solvation free energy of amino acids and side-chain analogues.
    Chang J, Lenhoff AM, Sandler SI.
    J Phys Chem B; 2007 Mar 01; 111(8):2098-106. PubMed ID: 17269814
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  • 14. The occurrence of C--H...O hydrogen bonds in alpha-helices and helix termini in globular proteins.
    Manikandan K, Ramakumar S.
    Proteins; 2004 Sep 01; 56(4):768-81. PubMed ID: 15281129
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  • 15. Topological hydrogen-bond definition to characterize the structure and dynamics of liquid water.
    Henchman RH, Irudayam SJ.
    J Phys Chem B; 2010 Dec 23; 114(50):16792-810. PubMed ID: 21114302
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  • 16. Hydrogen bonds in membrane proteins.
    Sheu SY, Schlag EW, Selzle HL, Yang DY.
    J Phys Chem B; 2009 Apr 16; 113(15):5318-26. PubMed ID: 19354309
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  • 17. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
    Avbelj F.
    J Mol Biol; 2000 Jul 28; 300(5):1335-59. PubMed ID: 10903873
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  • 18. Free energy, entropy, and enthalpy of a water molecule in various protein environments.
    Yu H, Rick SW.
    J Phys Chem B; 2010 Sep 09; 114(35):11552-60. PubMed ID: 20704188
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  • 19. Free energy determinants of secondary structure formation: I. alpha-Helices.
    Yang AS, Honig B.
    J Mol Biol; 1995 Sep 22; 252(3):351-65. PubMed ID: 7563056
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  • 20. Identifying native-like protein structures using physics-based potentials.
    Dominy BN, Brooks CL.
    J Comput Chem; 2002 Jan 15; 23(1):147-60. PubMed ID: 11913380
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