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Journal Abstract Search

107 related items for PubMed ID: 19705487

  • 1.
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  • 2. The Database of Macromolecular Motions: new features added at the decade mark.
    Flores S, Echols N, Milburn D, Hespenheide B, Keating K, Lu J, Wells S, Yu EZ, Thorpe M, Gerstein M.
    Nucleic Acids Res; 2006 Jan 01; 34(Database issue):D296-301. PubMed ID: 16381870
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  • 5. Topological and conformational analysis of the initiation and elongation complex of t7 RNA polymerase suggests a new twist.
    Theis K, Gong P, Martin CT.
    Biochemistry; 2004 Oct 12; 43(40):12709-15. PubMed ID: 15461442
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  • 6. The blind search for the closed states of hinge-bending proteins.
    Yesylevskyy SO, Kharkyanen VN, Demchenko AP.
    Proteins; 2008 May 01; 71(2):831-43. PubMed ID: 18004759
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  • 8. Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic.
    Krebs WG, Alexandrov V, Wilson CA, Echols N, Yu H, Gerstein M.
    Proteins; 2002 Sep 01; 48(4):682-95. PubMed ID: 12211036
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  • 9. Rigid domains in proteins: an algorithmic approach to their identification.
    Nichols WL, Rose GD, Ten Eyck LF, Zimm BH.
    Proteins; 1995 Sep 01; 23(1):38-48. PubMed ID: 8539249
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  • 11. Allostery wiring diagrams in the transitions that drive the GroEL reaction cycle.
    Tehver R, Chen J, Thirumalai D.
    J Mol Biol; 2009 Mar 27; 387(2):390-406. PubMed ID: 19121324
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  • 12. Robotic path planning and protein complex modeling considering low frequency intra-molecular loop and domain motions.
    Del Carpio CA, Qiang P, Ichiishi E, Tsuboi H, Koyama M, Hatakeyama N, Endou A, Takaba H, Kubo M, Miyamoto A.
    Genome Inform; 2006 Mar 27; 17(2):270-8. PubMed ID: 17503399
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  • 14. Normal mode analysis of proteins: a comparison of rigid cluster modes with C(alpha) coarse graining.
    Schuyler AD, Chirikjian GS.
    J Mol Graph Model; 2004 Jan 27; 22(3):183-93. PubMed ID: 14629977
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  • 15. Variability of the canonical loop conformations in serine proteinases inhibitors and other proteins.
    Apostoluk W, Otlewski J.
    Proteins; 1998 Sep 01; 32(4):459-74. PubMed ID: 9726416
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  • 16. Molecular dynamics simulations of domain motions of substrate-free S-adenosyl- L-homocysteine hydrolase in solution.
    Hu C, Fang J, Borchardt RT, Schowen RL, Kuczera K.
    Proteins; 2008 Apr 01; 71(1):131-43. PubMed ID: 17932938
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  • 17. Ab initio modeling of small, medium, and large loops in proteins.
    Galaktionov S, Nikiforovich GV, Marshall GR.
    Biopolymers; 2001 Apr 01; 60(2):153-68. PubMed ID: 11455548
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  • 18. Identification of the template-binding cleft of T7 RNA polymerase as the site for promoter binding by photochemical cross-linking with psoralen.
    Sastry SS.
    Biochemistry; 1996 Oct 22; 35(42):13519-30. PubMed ID: 8885831
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  • 19. Predicting functional sites with an automated algorithm suitable for heterogeneous datasets.
    La D, Livesay DR.
    BMC Bioinformatics; 2005 May 13; 6():116. PubMed ID: 15890082
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  • 20. Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.
    Huang SY, Zou X.
    Proteins; 2007 Feb 01; 66(2):399-421. PubMed ID: 17096427
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