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Journal Abstract Search

240 related items for PubMed ID: 19775152

  • 21. Unrestrictive identification of multiple post-translational modifications from tandem mass spectrometry using an error-tolerant algorithm based on an extended sequence tag approach.
    Na S, Jeong J, Park H, Lee KJ, Paek E.
    Mol Cell Proteomics; 2008 Dec; 7(12):2452-63. PubMed ID: 18701446
    [Abstract] [Full Text] [Related]

  • 22. PTMiner: Localization and Quality Control of Protein Modifications Detected in an Open Search and Its Application to Comprehensive Post-translational Modification Characterization in Human Proteome.
    An Z, Zhai L, Ying W, Qian X, Gong F, Tan M, Fu Y.
    Mol Cell Proteomics; 2019 Feb; 18(2):391-405. PubMed ID: 30420486
    [Abstract] [Full Text] [Related]

  • 23. MSModDetector: a tool for detecting mass shifts and post-translational modifications in individual ion mass spectrometry data.
    Faizi M, Fellers RT, Lu D, Drown BS, Jambhekar A, Lahav G, Kelleher NL, Gunawardena J.
    Bioinformatics; 2024 Jun 03; 40(6):. PubMed ID: 38796681
    [Abstract] [Full Text] [Related]

  • 24. Using ProSight PTM and related tools for targeted protein identification and characterization with high mass accuracy tandem MS data.
    Leduc RD, Kelleher NL.
    Curr Protoc Bioinformatics; 2007 Sep 03; Chapter 13():Unit 13.6. PubMed ID: 18428787
    [Abstract] [Full Text] [Related]

  • 25. Characterization of the 70S Ribosome from Rhodopseudomonas palustris using an integrated "top-down" and "bottom-up" mass spectrometric approach.
    Strader MB, Verberkmoes NC, Tabb DL, Connelly HM, Barton JW, Bruce BD, Pelletier DA, Davison BH, Hettich RL, Larimer FW, Hurst GB.
    J Proteome Res; 2004 Sep 03; 3(5):965-78. PubMed ID: 15473684
    [Abstract] [Full Text] [Related]

  • 26. Enhanced Global Post-translational Modification Discovery with MetaMorpheus.
    Solntsev SK, Shortreed MR, Frey BL, Smith LM.
    J Proteome Res; 2018 May 04; 17(5):1844-1851. PubMed ID: 29578715
    [Abstract] [Full Text] [Related]

  • 27. Efficiency of database search for identification of mutated and modified proteins via mass spectrometry.
    Pevzner PA, Mulyukov Z, Dancik V, Tang CL.
    Genome Res; 2001 Feb 04; 11(2):290-9. PubMed ID: 11157792
    [Abstract] [Full Text] [Related]

  • 28. Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data.
    Schaffer LV, Millikin RJ, Shortreed MR, Scalf M, Smith LM.
    J Proteome Res; 2020 Aug 07; 19(8):3510-3517. PubMed ID: 32584579
    [Abstract] [Full Text] [Related]

  • 29. ReCom: A semi-supervised approach to ultra-tolerant database search for improved identification of modified peptides.
    Laguillo-Gómez A, Calvo E, Martín-Cófreces N, Lozano-Prieto M, Sánchez-Madrid F, Vázquez J.
    J Proteomics; 2023 Sep 15; 287():104968. PubMed ID: 37463622
    [Abstract] [Full Text] [Related]

  • 30. ProSight PTM: an integrated environment for protein identification and characterization by top-down mass spectrometry.
    LeDuc RD, Taylor GK, Kim YB, Januszyk TE, Bynum LH, Sola JV, Garavelli JS, Kelleher NL.
    Nucleic Acids Res; 2004 Jul 01; 32(Web Server issue):W340-5. PubMed ID: 15215407
    [Abstract] [Full Text] [Related]

  • 31. A turn-key approach for large-scale identification of complex posttranslational modifications.
    Wang J, Anania VG, Knott J, Rush J, Lill JR, Bourne PE, Bandeira N.
    J Proteome Res; 2014 Mar 07; 13(3):1190-9. PubMed ID: 24437954
    [Abstract] [Full Text] [Related]

  • 32. A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modifications.
    Lu B, Chen T.
    Bioinformatics; 2003 Oct 07; 19 Suppl 2():ii113-21. PubMed ID: 14534180
    [Abstract] [Full Text] [Related]

  • 33. Fast multi-blind modification search through tandem mass spectrometry.
    Na S, Bandeira N, Paek E.
    Mol Cell Proteomics; 2012 Apr 07; 11(4):M111.010199. PubMed ID: 22186716
    [Abstract] [Full Text] [Related]

  • 34. Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy.
    Cesnik AJ, Shortreed MR, Sheynkman GM, Frey BL, Smith LM.
    J Proteome Res; 2016 Mar 04; 15(3):800-8. PubMed ID: 26704769
    [Abstract] [Full Text] [Related]

  • 35. Characterization of Proteoform Post-Translational Modifications by Top-Down and Bottom-Up Mass Spectrometry in Conjunction with Annotations.
    Chen W, Ding Z, Zang Y, Liu X.
    J Proteome Res; 2023 Oct 06; 22(10):3178-3189. PubMed ID: 37728997
    [Abstract] [Full Text] [Related]

  • 36. PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline.
    Shteynberg DD, Deutsch EW, Campbell DS, Hoopmann MR, Kusebauch U, Lee D, Mendoza L, Midha MK, Sun Z, Whetton AD, Moritz RL.
    J Proteome Res; 2019 Dec 06; 18(12):4262-4272. PubMed ID: 31290668
    [Abstract] [Full Text] [Related]

  • 37. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification.
    Carroll AJ, Heazlewood JL, Ito J, Millar AH.
    Mol Cell Proteomics; 2008 Feb 06; 7(2):347-69. PubMed ID: 17934214
    [Abstract] [Full Text] [Related]

  • 38. GlycoMaster DB: software to assist the automated identification of N-linked glycopeptides by tandem mass spectrometry.
    He L, Xin L, Shan B, Lajoie GA, Ma B.
    J Proteome Res; 2014 Sep 05; 13(9):3881-95. PubMed ID: 25113421
    [Abstract] [Full Text] [Related]

  • 39. PTM MarkerFinder, a software tool to detect and validate spectra from peptides carrying post-translational modifications.
    Nanni P, Panse C, Gehrig P, Mueller S, Grossmann J, Schlapbach R.
    Proteomics; 2013 Aug 05; 13(15):2251-5. PubMed ID: 23713006
    [Abstract] [Full Text] [Related]

  • 40. Gaining knowledge from previously unexplained spectra-application of the PTM-Explorer software to detect PTM in HUPO BPP MS/MS data.
    Chamrad DC, Körting G, Schäfer H, Stephan C, Thiele H, Apweiler R, Meyer HE, Marcus K, Blüggel M.
    Proteomics; 2006 Sep 05; 6(18):5048-58. PubMed ID: 16912973
    [Abstract] [Full Text] [Related]

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