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Journal Abstract Search

194 related items for PubMed ID: 19797409

  • 1. Functionally guided alignment of protein interaction networks for module detection.
    Ali W, Deane CM.
    Bioinformatics; 2009 Dec 01; 25(23):3166-73. PubMed ID: 19797409
    [Abstract] [Full Text] [Related]

  • 2. Global alignment of protein-protein interaction networks by graph matching methods.
    Zaslavskiy M, Bach F, Vert JP.
    Bioinformatics; 2009 Jun 15; 25(12):i259-67. PubMed ID: 19477997
    [Abstract] [Full Text] [Related]

  • 3. Fuse: multiple network alignment via data fusion.
    Gligorijević V, Malod-Dognin N, Pržulj N.
    Bioinformatics; 2016 Apr 15; 32(8):1195-203. PubMed ID: 26668003
    [Abstract] [Full Text] [Related]

  • 4. Domain-oriented edge-based alignment of protein interaction networks.
    Guo X, Hartemink AJ.
    Bioinformatics; 2009 Jun 15; 25(12):i240-6. PubMed ID: 19477994
    [Abstract] [Full Text] [Related]

  • 5. SiPAN: simultaneous prediction and alignment of protein-protein interaction networks.
    Alkan F, Erten C.
    Bioinformatics; 2015 Jul 15; 31(14):2356-63. PubMed ID: 25788620
    [Abstract] [Full Text] [Related]

  • 6. Alignment-free protein interaction network comparison.
    Ali W, Rito T, Reinert G, Sun F, Deane CM.
    Bioinformatics; 2014 Sep 01; 30(17):i430-7. PubMed ID: 25161230
    [Abstract] [Full Text] [Related]

  • 7. L-GRAAL: Lagrangian graphlet-based network aligner.
    Malod-Dognin N, Pržulj N.
    Bioinformatics; 2015 Jul 01; 31(13):2182-9. PubMed ID: 25725498
    [Abstract] [Full Text] [Related]

  • 8. LocalAli: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks.
    Hu J, Reinert K.
    Bioinformatics; 2015 Feb 01; 31(3):363-72. PubMed ID: 25282642
    [Abstract] [Full Text] [Related]

  • 9. NetCoffee: a fast and accurate global alignment approach to identify functionally conserved proteins in multiple networks.
    Hu J, Kehr B, Reinert K.
    Bioinformatics; 2014 Feb 15; 30(4):540-8. PubMed ID: 24336806
    [Abstract] [Full Text] [Related]

  • 10. IsoRankN: spectral methods for global alignment of multiple protein networks.
    Liao CS, Lu K, Baym M, Singh R, Berger B.
    Bioinformatics; 2009 Jun 15; 25(12):i253-8. PubMed ID: 19477996
    [Abstract] [Full Text] [Related]

  • 11. BEAMS: backbone extraction and merge strategy for the global many-to-many alignment of multiple PPI networks.
    Alkan F, Erten C.
    Bioinformatics; 2014 Feb 15; 30(4):531-9. PubMed ID: 24336414
    [Abstract] [Full Text] [Related]

  • 12. A Global Network Alignment Method Using Discrete Particle Swarm Optimization.
    Huang J, Gong M, Ma L.
    IEEE/ACM Trans Comput Biol Bioinform; 2018 Feb 15; 15(3):705-718. PubMed ID: 27775534
    [Abstract] [Full Text] [Related]

  • 13. Integrative network alignment reveals large regions of global network similarity in yeast and human.
    Kuchaiev O, Przulj N.
    Bioinformatics; 2011 May 15; 27(10):1390-6. PubMed ID: 21414992
    [Abstract] [Full Text] [Related]

  • 14. BalanceAli: Multiple PPI Network Alignment With Balanced High Coverage and Consistency.
    Gao J, Song B, Ke W, Hu X.
    IEEE Trans Nanobioscience; 2017 Jul 15; 16(5):333-340. PubMed ID: 28541215
    [Abstract] [Full Text] [Related]

  • 15. A statistical model of protein sequence similarity and function similarity reveals overly-specific function predictions.
    Louie B, Higdon R, Kolker E.
    PLoS One; 2009 Oct 21; 4(10):e7546. PubMed ID: 19844580
    [Abstract] [Full Text] [Related]

  • 16. Protein2Vec: Aligning Multiple PPI Networks with Representation Learning.
    Gao J, Tian L, Lv T, Wang J, Song B, Hu X.
    IEEE/ACM Trans Comput Biol Bioinform; 2021 Oct 21; 18(1):240-249. PubMed ID: 31478867
    [Abstract] [Full Text] [Related]

  • 17. NETAL: a new graph-based method for global alignment of protein-protein interaction networks.
    Neyshabur B, Khadem A, Hashemifar S, Arab SS.
    Bioinformatics; 2013 Jul 01; 29(13):1654-62. PubMed ID: 23696650
    [Abstract] [Full Text] [Related]

  • 18. MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins.
    Jones DT, Singh T, Kosciolek T, Tetchner S.
    Bioinformatics; 2015 Apr 01; 31(7):999-1006. PubMed ID: 25431331
    [Abstract] [Full Text] [Related]

  • 19. Protein-protein interaction network-based detection of functionally similar proteins within species.
    Song B, Wang F, Guo Y, Sang Q, Liu M, Li D, Fang W, Zhang D.
    Proteins; 2012 Jul 01; 80(7):1736-43. PubMed ID: 22411607
    [Abstract] [Full Text] [Related]

  • 20. Search and clustering orders of magnitude faster than BLAST.
    Edgar RC.
    Bioinformatics; 2010 Oct 01; 26(19):2460-1. PubMed ID: 20709691
    [Abstract] [Full Text] [Related]

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