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785 related items for PubMed ID: 19839646

  • 1. Dynamics and energetics of the base flipping conformation studied with base pair-mimic nucleosides.
    Nakano S, Oka H, Uotani Y, Uenishi K, Fujii M, Sugimoto N.
    Biochemistry; 2009 Dec 01; 48(47):11304-11. PubMed ID: 19839646
    [Abstract] [Full Text] [Related]

  • 2. Site-selective RNA cleavage by DNA bearing a base pair-mimic nucleoside.
    Nakano S, Uotani Y, Uenishi K, Fujii M, Sugimoto N.
    J Am Chem Soc; 2005 Jan 19; 127(2):518-9. PubMed ID: 15643864
    [Abstract] [Full Text] [Related]

  • 3. Functionalization of DNA by the base pair-mimic nucleosides.
    Oka H, Nakano S, Uotani Y, Uenishi K, Fujii M, Sugimoto N.
    Nucleic Acids Symp Ser (Oxf); 2007 Jan 19; (51):151-2. PubMed ID: 18029631
    [Abstract] [Full Text] [Related]

  • 4. Free energy and structural pathways of base flipping in a DNA GCGC containing sequence.
    Banavali NK, MacKerell AD.
    J Mol Biol; 2002 May 24; 319(1):141-60. PubMed ID: 12051942
    [Abstract] [Full Text] [Related]

  • 5. DNA mismatch-specific base flipping by a bisacridine macrocycle.
    David A, Bleimling N, Beuck C, Lehn JM, Weinhold E, Teulade-Fichou MP.
    Chembiochem; 2003 Dec 05; 4(12):1326-31. PubMed ID: 14661275
    [Abstract] [Full Text] [Related]

  • 6. DNA base flipping by a base pair-mimic nucleoside.
    Nakano S, Uotani Y, Uenishi K, Fujii M, Sugimoto N.
    Nucleic Acids Res; 2005 Dec 05; 33(22):7111-9. PubMed ID: 16361269
    [Abstract] [Full Text] [Related]

  • 7. Structures and energetics of base flipping of the thymine dimer depend on DNA sequence.
    O'Neil LL, Wiest O.
    J Phys Chem B; 2008 Apr 03; 112(13):4113-22. PubMed ID: 18335922
    [Abstract] [Full Text] [Related]

  • 8. Electron attachment induced proton transfer in a DNA nucleoside pair: 2'-deoxyguanosine-2'-deoxycytidine.
    Gu J, Xie Y, Schaefer HF.
    J Chem Phys; 2007 Oct 21; 127(15):155107. PubMed ID: 17949223
    [Abstract] [Full Text] [Related]

  • 9. The base-pairing ability of the base pair-mimic nucleosides.
    Nakano S, Uenishi K, Fujii M, Sugimoto N.
    Nucleic Acids Symp Ser (Oxf); 2007 Oct 21; (51):71-2. PubMed ID: 18029591
    [Abstract] [Full Text] [Related]

  • 10. Stabilization of tandem dG-dA base pairs in DNA-hairpins: replacement of the canonical bases by 7-deaza-7-propynylpurines.
    Seela F, Budow S, Shaikh KI, Jawalekar AM.
    Org Biomol Chem; 2005 Dec 07; 3(23):4221-6. PubMed ID: 16294250
    [Abstract] [Full Text] [Related]

  • 11. Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: DNA binding specificity based on energetics of DNA kinking.
    Chen S, Vojtechovsky J, Parkinson GN, Ebright RH, Berman HM.
    J Mol Biol; 2001 Nov 16; 314(1):63-74. PubMed ID: 11724532
    [Abstract] [Full Text] [Related]

  • 12. A selective, noncovalent assay for base flipping in DNA.
    O'Neil LL, Wiest O.
    J Am Chem Soc; 2005 Dec 07; 127(48):16800-1. PubMed ID: 16316222
    [Abstract] [Full Text] [Related]

  • 13. Protein-facilitated base flipping in DNA by cytosine-5-methyltransferase.
    Huang N, Banavali NK, MacKerell AD.
    Proc Natl Acad Sci U S A; 2003 Jan 07; 100(1):68-73. PubMed ID: 12506195
    [Abstract] [Full Text] [Related]

  • 14. Comparison of the thermodynamics and base-pair dynamics of a full LNA:DNA duplex and of the isosequential DNA:DNA duplex.
    Bruylants G, Boccongelli M, Snoussi K, Bartik K.
    Biochemistry; 2009 Sep 08; 48(35):8473-82. PubMed ID: 19670874
    [Abstract] [Full Text] [Related]

  • 15. Silver Ions in Non-canonical DNA Base Pairs: Metal-Mediated Mismatch Stabilization of 2'-Deoxyadenosine and 7-Deazapurine Derivatives with 2'-Deoxycytidine and 2'-Deoxyguanosine.
    Yang H, Seela F.
    Chemistry; 2016 Sep 05; 22(37):13336-46. PubMed ID: 27492501
    [Abstract] [Full Text] [Related]

  • 16. Nucleic acid base pair dynamics: the impact of sequence and structure using free-energy calculations.
    Giudice E, Lavery R.
    J Am Chem Soc; 2003 Apr 30; 125(17):4998-9. PubMed ID: 12708848
    [Abstract] [Full Text] [Related]

  • 17. Influences of ribonucleotide on a duplex conformation and its thermal stability: study with the chimeric RNA-DNA strands.
    Nakano S, Kanzaki T, Sugimoto N.
    J Am Chem Soc; 2004 Feb 04; 126(4):1088-95. PubMed ID: 14746477
    [Abstract] [Full Text] [Related]

  • 18. Structure, dynamics, and elasticity of free 16s rRNA helix 44 studied by molecular dynamics simulations.
    Réblová K, Lankas F, Rázga F, Krasovska MV, Koca J, Sponer J.
    Biopolymers; 2006 Aug 05; 82(5):504-20. PubMed ID: 16538608
    [Abstract] [Full Text] [Related]

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  • 20. HhaI DNA methyltransferase uses the protruding Gln237 for active flipping of its target cytosine.
    Daujotyte D, Serva S, Vilkaitis G, Merkiene E, Venclovas C, Klimasauskas S.
    Structure; 2004 Jun 05; 12(6):1047-55. PubMed ID: 15274924
    [Abstract] [Full Text] [Related]

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