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92 related items for PubMed ID: 19883369
1. Characterizing the D2 statistic: word matches in biological sequences. Forêt S, Wilson SR, Burden CJ. Stat Appl Genet Mol Biol; 2009; 8():Article 43. PubMed ID: 19883369 [Abstract] [Full Text] [Related]
2. Asymptotic behaviour and optimal word size for exact and approximate word matches between random sequences. Forêt S, Kantorovitz MR, Burden CJ. BMC Bioinformatics; 2006 Dec 18; 7 Suppl 5(Suppl 5):S21. PubMed ID: 17254306 [Abstract] [Full Text] [Related]
3. Phylogeny based discovery of regulatory elements. Gertz J, Fay JC, Cohen BA. BMC Bioinformatics; 2006 May 22; 7():266. PubMed ID: 16716228 [Abstract] [Full Text] [Related]
4. Alignment-free sequence comparison for biologically realistic sequences of moderate length. Burden CJ, Jing J, Wilson SR. Stat Appl Genet Mol Biol; 2012 May 22; 11(1):Article 3. PubMed ID: 22624182 [Abstract] [Full Text] [Related]
5. Predicting transcription factor binding sites using local over-representation and comparative genomics. Defrance M, Touzet H. BMC Bioinformatics; 2006 Aug 31; 7():396. PubMed ID: 16945132 [Abstract] [Full Text] [Related]
6. Biological evaluation of d2, an algorithm for high-performance sequence comparison. Hide W, Burke J, Davison DB. J Comput Biol; 1994 Aug 31; 1(3):199-215. PubMed ID: 8790465 [Abstract] [Full Text] [Related]
7. Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA. Pierstorff N, Bergman CM, Wiehe T. Bioinformatics; 2006 Dec 01; 22(23):2858-64. PubMed ID: 17032682 [Abstract] [Full Text] [Related]
8. Gene identification through large-scale EST sequence processing. Lindlöf A. Appl Bioinformatics; 2003 Dec 01; 2(3):123-9. PubMed ID: 15130797 [Abstract] [Full Text] [Related]
9. CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting. Berezikov E, Guryev V, Plasterk RH, Cuppen E. Genome Res; 2004 Jan 01; 14(1):170-8. PubMed ID: 14672977 [Abstract] [Full Text] [Related]
10. ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors. Papatsenko D. Bioinformatics; 2007 Apr 15; 23(8):1032-4. PubMed ID: 17308342 [Abstract] [Full Text] [Related]
17. Code optimization of the subroutine to remove near identical matches in the sequence database homology search tool PSI-BLAST. Aspnäs M, Mattila K, Osowski K, Westerholm J. J Comput Biol; 2010 Jun 15; 17(6):819-23. PubMed ID: 20583927 [Abstract] [Full Text] [Related]
19. Discovery of regulatory elements in vertebrates through comparative genomics. Prakash A, Tompa M. Nat Biotechnol; 2005 Oct 15; 23(10):1249-56. PubMed ID: 16211068 [Abstract] [Full Text] [Related]