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Journal Abstract Search

230 related items for PubMed ID: 19933160

  • 1. MADS+: discovery of differential splicing events from Affymetrix exon junction array data.
    Shen S, Warzecha CC, Carstens RP, Xing Y.
    Bioinformatics; 2010 Jan 15; 26(2):268-9. PubMed ID: 19933160
    [Abstract] [Full Text] [Related]

  • 2. MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays.
    Xing Y, Stoilov P, Kapur K, Han A, Jiang H, Shen S, Black DL, Wong WH.
    RNA; 2008 Aug 15; 14(8):1470-9. PubMed ID: 18566192
    [Abstract] [Full Text] [Related]

  • 3. Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation.
    Ha KCh, Coulombe-Huntington J, Majewski J.
    BMC Genomics; 2009 Nov 12; 10():519. PubMed ID: 19909511
    [Abstract] [Full Text] [Related]

  • 4. The Usage of Exon-Exon Splice Junctions for the Detection of Alternative Splicing using the REIDS model.
    Van Moerbeke M, Kasim A, Shkedy Z.
    Sci Rep; 2018 May 29; 8(1):8331. PubMed ID: 29844567
    [Abstract] [Full Text] [Related]

  • 5. Overestimation of alternative splicing caused by variable probe characteristics in exon arrays.
    Gaidatzis D, Jacobeit K, Oakeley EJ, Stadler MB.
    Nucleic Acids Res; 2009 Sep 29; 37(16):e107. PubMed ID: 19528075
    [Abstract] [Full Text] [Related]

  • 6. easyExon--a Java-based GUI tool for processing and visualization of Affymetrix exon array data.
    Chang TY, Li YY, Jen CH, Yang TP, Lin CH, Hsu MT, Wang HW.
    BMC Bioinformatics; 2008 Oct 14; 9():432. PubMed ID: 18851762
    [Abstract] [Full Text] [Related]

  • 7. Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.
    Rambaldi D, Felice B, Praz V, Bucher P, Cittaro D, Guffanti A.
    BMC Bioinformatics; 2007 Mar 08; 8 Suppl 1(Suppl 1):S17. PubMed ID: 17430561
    [Abstract] [Full Text] [Related]

  • 8. Gene expression and isoform variation analysis using Affymetrix Exon Arrays.
    Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.
    BMC Genomics; 2008 Nov 07; 9():529. PubMed ID: 18990248
    [Abstract] [Full Text] [Related]

  • 9. Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.
    Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y.
    BMC Genomics; 2006 Dec 27; 7():325. PubMed ID: 17192196
    [Abstract] [Full Text] [Related]

  • 10. Detecting tissue-specific alternative splicing and disease-associated aberrant splicing of the PTCH gene with exon junction microarrays.
    Nagao K, Togawa N, Fujii K, Uchikawa H, Kohno Y, Yamada M, Miyashita T.
    Hum Mol Genet; 2005 Nov 15; 14(22):3379-88. PubMed ID: 16203740
    [Abstract] [Full Text] [Related]

  • 11. RASA: Robust Alternative Splicing Analysis for Human Transcriptome Arrays.
    Seok J, Xu W, Davis RW, Xiao W.
    Sci Rep; 2015 Jul 06; 5():11917. PubMed ID: 26145443
    [Abstract] [Full Text] [Related]

  • 12. Comparison of RNA-seq and microarray platforms for splice event detection using a cross-platform algorithm.
    Romero JP, Ortiz-Estévez M, Muniategui A, Carrancio S, de Miguel FJ, Carazo F, Montuenga LM, Loos R, Pío R, Trotter MWB, Rubio A.
    BMC Genomics; 2018 Sep 25; 19(1):703. PubMed ID: 30253752
    [Abstract] [Full Text] [Related]

  • 13. FIRMA: a method for detection of alternative splicing from exon array data.
    Purdom E, Simpson KM, Robinson MD, Conboy JG, Lapuk AV, Speed TP.
    Bioinformatics; 2008 Aug 01; 24(15):1707-14. PubMed ID: 18573797
    [Abstract] [Full Text] [Related]

  • 14. Exon Array Analyzer: a web interface for Affymetrix exon array analysis.
    Gellert P, Uchida S, Braun T.
    Bioinformatics; 2009 Dec 15; 25(24):3323-4. PubMed ID: 19808879
    [Abstract] [Full Text] [Related]

  • 15. SplicerEX: a tool for the automated detection and classification of mRNA changes from conventional and splice-sensitive microarray expression data.
    Robinson TJ, Forte E, Salinas RE, Puri S, Marengo M, Garcia-Blanco MA, Luftig MA.
    RNA; 2012 Aug 15; 18(8):1435-45. PubMed ID: 22736799
    [Abstract] [Full Text] [Related]

  • 16. EventPointer: an effective identification of alternative splicing events using junction arrays.
    Romero JP, Muniategui A, De Miguel FJ, Aramburu A, Montuenga L, Pio R, Rubio A.
    BMC Genomics; 2016 Jun 17; 17():467. PubMed ID: 27315794
    [Abstract] [Full Text] [Related]

  • 17. MMBGX: a method for estimating expression at the isoform level and detecting differential splicing using whole-transcript Affymetrix arrays.
    Turro E, Lewin A, Rose A, Dallman MJ, Richardson S.
    Nucleic Acids Res; 2010 Jan 17; 38(1):e4. PubMed ID: 19854940
    [Abstract] [Full Text] [Related]

  • 18. Differentially expressed alternatively spliced genes in malignant pleural mesothelioma identified using massively parallel transcriptome sequencing.
    Dong L, Jensen RV, De Rienzo A, Gordon GJ, Xu Y, Sugarbaker DJ, Bueno R.
    BMC Med Genet; 2009 Dec 31; 10():149. PubMed ID: 20043850
    [Abstract] [Full Text] [Related]

  • 19. Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing.
    Castle J, Garrett-Engele P, Armour CD, Duenwald SJ, Loerch PM, Meyer MR, Schadt EE, Stoughton R, Parrish ML, Shoemaker DD, Johnson JM.
    Genome Biol; 2003 Dec 31; 4(10):R66. PubMed ID: 14519201
    [Abstract] [Full Text] [Related]

  • 20. Inferring global levels of alternative splicing isoforms using a generative model of microarray data.
    Shai O, Morris QD, Blencowe BJ, Frey BJ.
    Bioinformatics; 2006 Mar 01; 22(5):606-13. PubMed ID: 16403798
    [Abstract] [Full Text] [Related]

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