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Journal Abstract Search

108 related items for PubMed ID: 19939735

  • 21. ProMate: a structure based prediction program to identify the location of protein-protein binding sites.
    Neuvirth H, Raz R, Schreiber G.
    J Mol Biol; 2004 Apr 16; 338(1):181-99. PubMed ID: 15050833
    [Abstract] [Full Text] [Related]

  • 22. A novel method for scoring of docked protein complexes using predicted protein-protein binding sites.
    Gottschalk KE, Neuvirth H, Schreiber G.
    Protein Eng Des Sel; 2004 Feb 16; 17(2):183-9. PubMed ID: 15007163
    [Abstract] [Full Text] [Related]

  • 23. [Computer drug design based on analysis of a target macromolecule structure. I. Search and description of a ligand binding site in a target molecule].
    Ivanov AS, Dubanov AV, Skvortsov VS, Archakov AI.
    Vopr Med Khim; 2002 Feb 16; 48(3):304-15. PubMed ID: 12243090
    [Abstract] [Full Text] [Related]

  • 24. Development and validation of a genetic algorithm for flexible docking.
    Jones G, Willett P, Glen RC, Leach AR, Taylor R.
    J Mol Biol; 1997 Apr 04; 267(3):727-48. PubMed ID: 9126849
    [Abstract] [Full Text] [Related]

  • 25. A flexible docking procedure for the exploration of peptide binding selectivity to known structures and homology models of PDZ domains.
    Niv MY, Weinstein H.
    J Am Chem Soc; 2005 Oct 12; 127(40):14072-9. PubMed ID: 16201829
    [Abstract] [Full Text] [Related]

  • 26. Structural prediction of peptides bound to MHC class I.
    Fagerberg T, Cerottini JC, Michielin O.
    J Mol Biol; 2006 Feb 17; 356(2):521-46. PubMed ID: 16368108
    [Abstract] [Full Text] [Related]

  • 27. Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function.
    Zhang C, Liu S, Zhou Y.
    Proteins; 2005 Aug 01; 60(2):314-8. PubMed ID: 15981255
    [Abstract] [Full Text] [Related]

  • 28. Automatic identification and representation of protein binding sites for molecular docking.
    Ruppert J, Welch W, Jain AN.
    Protein Sci; 1997 Mar 01; 6(3):524-33. PubMed ID: 9070435
    [Abstract] [Full Text] [Related]

  • 29. Improving CAPRI predictions: optimized desolvation for rigid-body docking.
    Fernández-Recio J, Abagyan R, Totrov M.
    Proteins; 2005 Aug 01; 60(2):308-13. PubMed ID: 15981266
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  • 35. MIAX: a new paradigm for modeling biomacromolecular interactions and complex formation in condensed phases.
    Del Carpio-Muñoz CA, Ichiishi E, Yoshimori A, Yoshikawa T.
    Proteins; 2002 Sep 01; 48(4):696-732. PubMed ID: 12211037
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  • 36. Physicochemical and residue conservation calculations to improve the ranking of protein-protein docking solutions.
    Duan Y, Reddy BV, Kaznessis YN.
    Protein Sci; 2005 Feb 01; 14(2):316-28. PubMed ID: 15659366
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  • 37. The use of protein-ligand interaction fingerprints in docking.
    Brewerton SC.
    Curr Opin Drug Discov Devel; 2008 May 01; 11(3):356-64. PubMed ID: 18428089
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  • 39. Form follows function: shape analysis of protein cavities for receptor-based drug design.
    Weisel M, Proschak E, Kriegl JM, Schneider G.
    Proteomics; 2009 Jan 01; 9(2):451-9. PubMed ID: 19142949
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