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Journal Abstract Search

638 related items for PubMed ID: 19958507

  • 1. TTS mapping: integrative WEB tool for analysis of triplex formation target DNA sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome.
    Jenjaroenpun P, Kuznetsov VA.
    BMC Genomics; 2009 Dec 03; 10 Suppl 3(Suppl 3):S9. PubMed ID: 19958507
    [Abstract] [Full Text] [Related]

  • 2. The TTSMI database: a catalog of triplex target DNA sites associated with genes and regulatory elements in the human genome.
    Jenjaroenpun P, Chew CS, Yong TP, Choowongkomon K, Thammasorn W, Kuznetsov VA.
    Nucleic Acids Res; 2015 Jan 03; 43(Database issue):D110-6. PubMed ID: 25324314
    [Abstract] [Full Text] [Related]

  • 3. Polypurine reverse-Hoogsteen (PPRH) oligonucleotides can form triplexes with their target sequences even under conditions where they fold into G-quadruplexes.
    Solé A, Delagoutte E, Ciudad CJ, Noé V, Alberti P.
    Sci Rep; 2017 Jan 09; 7():39898. PubMed ID: 28067256
    [Abstract] [Full Text] [Related]

  • 4. A web-based search engine for triplex-forming oligonucleotide target sequences.
    Gaddis SS, Wu Q, Thames HD, DiGiovanni J, Walborg EF, MacLeod MC, Vasquez KM.
    Oligonucleotides; 2006 Jan 09; 16(2):196-201. PubMed ID: 16764543
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  • 5. Purine- and pyrimidine-triple-helix-forming oligonucleotides recognize qualitatively different target sites at the ribosomal DNA locus.
    Maldonado R, Filarsky M, Grummt I, Längst G.
    RNA; 2018 Mar 09; 24(3):371-380. PubMed ID: 29222118
    [Abstract] [Full Text] [Related]

  • 6. QGRS-H Predictor: a web server for predicting homologous quadruplex forming G-rich sequence motifs in nucleotide sequences.
    Menendez C, Frees S, Bagga PS.
    Nucleic Acids Res; 2012 Jul 09; 40(Web Server issue):W96-W103. PubMed ID: 22576365
    [Abstract] [Full Text] [Related]

  • 7. Single strand targeted triplex-formation. Destabilization of guanine quadruplex structures by foldback triplex-forming oligonucleotides.
    Kandimalla ER, Agrawal S.
    Nucleic Acids Res; 1995 Mar 25; 23(6):1068-74. PubMed ID: 7537368
    [Abstract] [Full Text] [Related]

  • 8. Genome-wide computational analysis of potential long noncoding RNA mediated DNA:DNA:RNA triplexes in the human genome.
    Jalali S, Singh A, Maiti S, Scaria V.
    J Transl Med; 2017 Sep 02; 15(1):186. PubMed ID: 28865451
    [Abstract] [Full Text] [Related]

  • 9. QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences.
    Kikin O, D'Antonio L, Bagga PS.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W676-82. PubMed ID: 16845096
    [Abstract] [Full Text] [Related]

  • 10. Facilitation of a structural transition in the polypurine/polypyrimidine tract within the proximal promoter region of the human VEGF gene by the presence of potassium and G-quadruplex-interactive agents.
    Sun D, Guo K, Rusche JJ, Hurley LH.
    Nucleic Acids Res; 2005 Jul 01; 33(18):6070-80. PubMed ID: 16239639
    [Abstract] [Full Text] [Related]

  • 11. Purine-rich low complexity regions are potential RNA binding hubs in the human genome.
    Antonov I, Medvedeva YA.
    F1000Res; 2018 Jul 01; 7():76. PubMed ID: 31131080
    [Abstract] [Full Text] [Related]

  • 12. Role of conserved cis-regulatory elements in the post-transcriptional regulation of the human MECP2 gene involved in autism.
    Bagga JS, D'Antonio LA.
    Hum Genomics; 2013 Sep 16; 7(1):19. PubMed ID: 24040966
    [Abstract] [Full Text] [Related]

  • 13. Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes.
    Eddy J, Maizels N.
    Nucleic Acids Res; 2008 Mar 16; 36(4):1321-33. PubMed ID: 18187510
    [Abstract] [Full Text] [Related]

  • 14. Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co-localization within regulatory modules.
    Acevedo-Luna N, Mariño-Ramírez L, Halbert A, Hansen U, Landsman D, Spouge JL.
    BMC Bioinformatics; 2016 Nov 21; 17(1):479. PubMed ID: 27871221
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  • 17. The UCSC Genome Browser.
    Karolchik D, Hinrichs AS, Kent WJ.
    Curr Protoc Bioinformatics; 2007 Mar 21; Chapter 1():Unit 1.4. PubMed ID: 18428780
    [Abstract] [Full Text] [Related]

  • 18. Triplex-forming MicroRNAs form stable complexes with HIV-1 provirus and inhibit its replication.
    Kanak M, Alseiari M, Balasubramanian P, Addanki K, Aggarwal M, Noorali S, Kalsum A, Mahalingam K, Pace G, Panasik N, Bagasra O.
    Appl Immunohistochem Mol Morphol; 2010 Dec 21; 18(6):532-45. PubMed ID: 20502318
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