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Journal Abstract Search

187 related items for PubMed ID: 20052905

  • 1. An analysis pipeline for the inference of protein-protein interaction networks.
    Taylor RC, Singhal M, Daly DS, Gilmore J, Cannon WR, Domico K, White AM, Auberry DL, Auberry KJ, Hooker BS, Hurst G, McDermott JE, McDonald WH, Pelletier DA, Schmoyer D, Wiley HS.
    Int J Data Min Bioinform; 2009; 3(4):409-30. PubMed ID: 20052905
    [Abstract] [Full Text] [Related]

  • 2. Biological Network Inference and analysis using SEBINI and CABIN.
    Taylor R, Singhal M.
    Methods Mol Biol; 2009; 541():551-76. PubMed ID: 19381531
    [Abstract] [Full Text] [Related]

  • 3. A network inference workflow applied to virulence-related processes in Salmonella typhimurium.
    Taylor RC, Singhal M, Weller J, Khoshnevis S, Shi L, McDermott J.
    Ann N Y Acad Sci; 2009 Mar; 1158():143-58. PubMed ID: 19348639
    [Abstract] [Full Text] [Related]

  • 4. A Bayesian estimator of protein-protein association probabilities.
    Gilmore JM, Auberry DL, Sharp JL, White AM, Anderson KK, Daly DS.
    Bioinformatics; 2008 Jul 01; 24(13):1554-5. PubMed ID: 18499697
    [Abstract] [Full Text] [Related]

  • 5. CABIN: collective analysis of biological interaction networks.
    Singhal M, Domico K.
    Comput Biol Chem; 2007 Jun 01; 31(3):222-5. PubMed ID: 17500038
    [Abstract] [Full Text] [Related]

  • 6. SEBINI: Software Environment for BIological Network Inference.
    Taylor RC, Shah A, Treatman C, Blevins M.
    Bioinformatics; 2006 Nov 01; 22(21):2706-8. PubMed ID: 16954144
    [Abstract] [Full Text] [Related]

  • 7. Computational detection of protein complexes in AP-MS experiments.
    Choi H.
    Proteomics; 2012 May 01; 12(10):1663-8. PubMed ID: 22711593
    [Abstract] [Full Text] [Related]

  • 8. Protein Inference from the Integration of Tandem MS Data and Interactome Networks.
    Zhong J, Wang J, Ding X, Zhang Z, Li M, Wu FX, Pan Y.
    IEEE/ACM Trans Comput Biol Bioinform; 2017 May 01; 14(6):1399-1409. PubMed ID: 28113634
    [Abstract] [Full Text] [Related]

  • 9. Reinforce: An Ensemble Approach for Inferring PPI Network from AP-MS Data.
    Tian B, Duan Q, Zhao C, Teng B, He Z.
    IEEE/ACM Trans Comput Biol Bioinform; 2019 May 01; 16(2):365-376. PubMed ID: 28534782
    [Abstract] [Full Text] [Related]

  • 10. Computational framework for analysis of prey-prey associations in interaction proteomics identifies novel human protein-protein interactions and networks.
    Saha S, Dazard JE, Xu H, Ewing RM.
    J Proteome Res; 2012 Sep 07; 11(9):4476-87. PubMed ID: 22845868
    [Abstract] [Full Text] [Related]

  • 11. Detection of protein complexes from affinity purification/mass spectrometry data.
    Cai B, Wang H, Zheng H, Wang H.
    BMC Syst Biol; 2012 Sep 07; 6 Suppl 3(Suppl 3):S4. PubMed ID: 23282282
    [Abstract] [Full Text] [Related]

  • 12. Protein complex analysis: From raw protein lists to protein interaction networks.
    Meysman P, Titeca K, Eyckerman S, Tavernier J, Goethals B, Martens L, Valkenborg D, Laukens K.
    Mass Spectrom Rev; 2017 Sep 07; 36(5):600-614. PubMed ID: 26709718
    [Abstract] [Full Text] [Related]

  • 13. Systematic computational prediction of protein interaction networks.
    Lees JG, Heriche JK, Morilla I, Ranea JA, Orengo CA.
    Phys Biol; 2011 Jun 07; 8(3):035008. PubMed ID: 21572181
    [Abstract] [Full Text] [Related]

  • 14. SiPAN: simultaneous prediction and alignment of protein-protein interaction networks.
    Alkan F, Erten C.
    Bioinformatics; 2015 Jul 15; 31(14):2356-63. PubMed ID: 25788620
    [Abstract] [Full Text] [Related]

  • 15. Identifying the overlapping complexes in protein interaction networks.
    Li M, Wang J, Chen J, Cai Z, Chen G.
    Int J Data Min Bioinform; 2010 Jul 15; 4(1):91-108. PubMed ID: 20376924
    [Abstract] [Full Text] [Related]

  • 16. In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.
    Audain E, Uszkoreit J, Sachsenberg T, Pfeuffer J, Liang X, Hermjakob H, Sanchez A, Eisenacher M, Reinert K, Tabb DL, Kohlbacher O, Perez-Riverol Y.
    J Proteomics; 2017 Jan 06; 150():170-182. PubMed ID: 27498275
    [Abstract] [Full Text] [Related]

  • 17. From pull-down data to protein interaction networks and complexes with biological relevance.
    Zhang B, Park BH, Karpinets T, Samatova NF.
    Bioinformatics; 2008 Apr 01; 24(7):979-86. PubMed ID: 18304937
    [Abstract] [Full Text] [Related]

  • 18. Selective integration of multiple biological data for supervised network inference.
    Kato T, Tsuda K, Asai K.
    Bioinformatics; 2005 May 15; 21(10):2488-95. PubMed ID: 15728114
    [Abstract] [Full Text] [Related]

  • 19. INDEX: Incremental depth extension approach for protein-protein interaction networks alignment.
    Mir A, Naghibzadeh M, Saadati N.
    Biosystems; 2017 Dec 15; 162():24-34. PubMed ID: 28860070
    [Abstract] [Full Text] [Related]

  • 20. HKC: an algorithm to predict protein complexes in protein-protein interaction networks.
    Wang X, Wang Z, Ye J.
    J Biomed Biotechnol; 2011 Dec 15; 2011():480294. PubMed ID: 22174556
    [Abstract] [Full Text] [Related]

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