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Journal Abstract Search

207 related items for PubMed ID: 20082382

  • 1. A new Lamarckian genetic algorithm for flexible ligand-receptor docking.
    Fuhrmann J, Rurainski A, Lenhof HP, Neumann D.
    J Comput Chem; 2010 Jul 15; 31(9):1911-8. PubMed ID: 20082382
    [Abstract] [Full Text] [Related]

  • 2. SODOCK: swarm optimization for highly flexible protein-ligand docking.
    Chen HM, Liu BF, Huang HL, Hwang SF, Ho SY.
    J Comput Chem; 2007 Jan 30; 28(2):612-23. PubMed ID: 17186483
    [Abstract] [Full Text] [Related]

  • 3. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
    Taylor RD, Jewsbury PJ, Essex JW.
    J Comput Chem; 2003 Oct 30; 24(13):1637-56. PubMed ID: 12926007
    [Abstract] [Full Text] [Related]

  • 4. Ligand-protein docking using a quantum stochastic tunneling optimization method.
    Mancera RL, Källblad P, Todorov NP.
    J Comput Chem; 2004 Apr 30; 25(6):858-64. PubMed ID: 15011257
    [Abstract] [Full Text] [Related]

  • 5. A new method for the gradient-based optimization of molecular complexes.
    Fuhrmann J, Rurainski A, Lenhof HP, Neumann D.
    J Comput Chem; 2009 Jul 15; 30(9):1371-8. PubMed ID: 19031415
    [Abstract] [Full Text] [Related]

  • 6. Development and validation of a genetic algorithm for flexible docking.
    Jones G, Willett P, Glen RC, Leach AR, Taylor R.
    J Mol Biol; 1997 Apr 04; 267(3):727-48. PubMed ID: 9126849
    [Abstract] [Full Text] [Related]

  • 7. GAsDock: a new approach for rapid flexible docking based on an improved multi-population genetic algorithm.
    Li H, Li C, Gui C, Luo X, Chen K, Shen J, Wang X, Jiang H.
    Bioorg Med Chem Lett; 2004 Sep 20; 14(18):4671-6. PubMed ID: 15324886
    [Abstract] [Full Text] [Related]

  • 8. DynaDock: A new molecular dynamics-based algorithm for protein-peptide docking including receptor flexibility.
    Antes I.
    Proteins; 2010 Apr 20; 78(5):1084-104. PubMed ID: 20017216
    [Abstract] [Full Text] [Related]

  • 9. Fragment-Based flexible ligand docking by evolutionary optimization.
    Budin N, Majeux N, Caflisch A.
    Biol Chem; 2001 Sep 20; 382(9):1365-72. PubMed ID: 11688719
    [Abstract] [Full Text] [Related]

  • 10. Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.
    Huang SY, Zou X.
    Proteins; 2007 Feb 01; 66(2):399-421. PubMed ID: 17096427
    [Abstract] [Full Text] [Related]

  • 11. pso@autodock: a fast flexible molecular docking program based on Swarm intelligence.
    Namasivayam V, Günther R.
    Chem Biol Drug Des; 2007 Dec 01; 70(6):475-84. PubMed ID: 17986206
    [Abstract] [Full Text] [Related]

  • 12. Surflex: fully automatic flexible molecular docking using a molecular similarity-based search engine.
    Jain AN.
    J Med Chem; 2003 Feb 13; 46(4):499-511. PubMed ID: 12570372
    [Abstract] [Full Text] [Related]

  • 13. Empirical scoring functions for advanced protein-ligand docking with PLANTS.
    Korb O, Stützle T, Exner TE.
    J Chem Inf Model; 2009 Jan 13; 49(1):84-96. PubMed ID: 19125657
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  • 18. LigDockCSA: protein-ligand docking using conformational space annealing.
    Shin WH, Heo L, Lee J, Ko J, Seok C, Lee J.
    J Comput Chem; 2011 Nov 30; 32(15):3226-32. PubMed ID: 21837636
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