These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. Reductive half-reaction of aldehyde oxidoreductase toward acetaldehyde: a combined QM/MM study. Metz S, Wang D, Thiel W. J Am Chem Soc; 2009 Apr 08; 131(13):4628-40. PubMed ID: 19290633 [Abstract] [Full Text] [Related]
3. Reaction path potential for complex systems derived from combined ab initio quantum mechanical and molecular mechanical calculations. Lu Z, Yang W. J Chem Phys; 2004 Jul 01; 121(1):89-100. PubMed ID: 15260525 [Abstract] [Full Text] [Related]
4. Theoretical perspectives on the reaction mechanism of serine proteases: the reaction free energy profiles of the acylation process. Ishida T, Kato S. J Am Chem Soc; 2003 Oct 01; 125(39):12035-48. PubMed ID: 14505425 [Abstract] [Full Text] [Related]
5. Towards accurate ab initio QM/MM calculations of free-energy profiles of enzymatic reactions. Rosta E, Klähn M, Warshel A. J Phys Chem B; 2006 Feb 16; 110(6):2934-41. PubMed ID: 16471904 [Abstract] [Full Text] [Related]
6. Testing high-level QM/MM methods for modeling enzyme reactions: acetyl-CoA deprotonation in citrate synthase. van der Kamp MW, Zurek J, Manby FR, Harvey JN, Mulholland AJ. J Phys Chem B; 2010 Sep 02; 114(34):11303-14. PubMed ID: 20690673 [Abstract] [Full Text] [Related]
7. Toward accurate barriers for enzymatic reactions: QM/MM case study on p-hydroxybenzoate hydroxylase. Mata RA, Werner HJ, Thiel S, Thiel W. J Chem Phys; 2008 Jan 14; 128(2):025104. PubMed ID: 18205479 [Abstract] [Full Text] [Related]
10. Ab initio and density functional theory reinvestigation of gas-phase sulfuric acid monohydrate and ammonium hydrogen sulfate. Kurtén T, Sundberg MR, Vehkamäki H, Noppel M, Blomqvist J, Kulmala M. J Phys Chem A; 2006 Jun 08; 110(22):7178-88. PubMed ID: 16737269 [Abstract] [Full Text] [Related]
11. A combined QM/MM study on the reductive half-reaction of xanthine oxidase: substrate orientation and mechanism. Metz S, Thiel W. J Am Chem Soc; 2009 Oct 21; 131(41):14885-902. PubMed ID: 19788181 [Abstract] [Full Text] [Related]
13. Reaction mechanism of monoethanolamine with CO₂ in aqueous solution from molecular modeling. Xie HB, Zhou Y, Zhang Y, Johnson JK. J Phys Chem A; 2010 Nov 04; 114(43):11844-52. PubMed ID: 20939618 [Abstract] [Full Text] [Related]
17. Theoretical studies on the deacylation step of serine protease catalysis in the gas phase, in solution, and in elastase. Topf M, Richards WG. J Am Chem Soc; 2004 Nov 10; 126(44):14631-41. PubMed ID: 15521783 [Abstract] [Full Text] [Related]
18. Boryl substitution of acetaldehyde makes it an enol: inconsistency between Gn/CBS and ab initio/DFT data. Balabin RM. J Phys Chem A; 2010 Mar 18; 114(10):3698-702. PubMed ID: 20155960 [Abstract] [Full Text] [Related]
19. Quantum mechanics/molecular mechanics minimum free-energy path for accurate reaction energetics in solution and enzymes: sequential sampling and optimization on the potential of mean force surface. Hu H, Lu Z, Parks JM, Burger SK, Yang W. J Chem Phys; 2008 Jan 21; 128(3):034105. PubMed ID: 18205486 [Abstract] [Full Text] [Related]