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Journal Abstract Search

185 related items for PubMed ID: 20122144

  • 1. Comparative evolutionary analysis of protein complexes in E. coli and yeast.
    Reid AJ, Ranea JA, Orengo CA.
    BMC Genomics; 2010 Feb 01; 11():79. PubMed ID: 20122144
    [Abstract] [Full Text] [Related]

  • 2. Evolutionary rate heterogeneity of core and attachment proteins in yeast protein complexes.
    Chakraborty S, Ghosh TC.
    Genome Biol Evol; 2013 Feb 01; 5(7):1366-75. PubMed ID: 23814130
    [Abstract] [Full Text] [Related]

  • 3. Detection of overlapping protein complexes in gene expression, phenotype and pathways of Saccharomyces cerevisiae using Prorank based Fuzzy algorithm.
    Manikandan P, Ramyachitra D, Banupriya D.
    Gene; 2016 Apr 15; 580(2):144-158. PubMed ID: 26809099
    [Abstract] [Full Text] [Related]

  • 4. Predicting protein complexes from weighted protein-protein interaction graphs with a novel unsupervised methodology: Evolutionary enhanced Markov clustering.
    Theofilatos K, Pavlopoulou N, Papasavvas C, Likothanassis S, Dimitrakopoulos C, Georgopoulos E, Moschopoulos C, Mavroudi S.
    Artif Intell Med; 2015 Mar 15; 63(3):181-9. PubMed ID: 25765008
    [Abstract] [Full Text] [Related]

  • 5. Identification of Essential Proteins Based on a New Combination of Local Interaction Density and Protein Complexes.
    Luo J, Qi Y.
    PLoS One; 2015 Mar 15; 10(6):e0131418. PubMed ID: 26125187
    [Abstract] [Full Text] [Related]

  • 6. Comparison of the small molecule metabolic enzymes of Escherichia coli and Saccharomyces cerevisiae.
    Jardine O, Gough J, Chothia C, Teichmann SA.
    Genome Res; 2002 Jun 15; 12(6):916-29. PubMed ID: 12045145
    [Abstract] [Full Text] [Related]

  • 7. Higher-order genomic organization of cellular functions in yeast.
    Tuller T, Rubinstein U, Bar D, Gurevitch M, Ruppin E, Kupiec M.
    J Comput Biol; 2009 Feb 15; 16(2):303-16. PubMed ID: 19193148
    [Abstract] [Full Text] [Related]

  • 8. Comparative assessment of performance and genome dependence among phylogenetic profiling methods.
    Snitkin ES, Gustafson AM, Mellor J, Wu J, DeLisi C.
    BMC Bioinformatics; 2006 Sep 27; 7():420. PubMed ID: 17005048
    [Abstract] [Full Text] [Related]

  • 9. Evolutionary cores of domain co-occurrence networks.
    Wuchty S, Almaas E.
    BMC Evol Biol; 2005 Mar 23; 5():24. PubMed ID: 15788102
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  • 10. A survey of computational methods for protein complex prediction from protein interaction networks.
    Srihari S, Leong HW.
    J Bioinform Comput Biol; 2013 Apr 23; 11(2):1230002. PubMed ID: 23600810
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  • 11. A complex-centric view of protein network evolution.
    Yosef N, Kupiec M, Ruppin E, Sharan R.
    Nucleic Acids Res; 2009 Jul 23; 37(12):e88. PubMed ID: 19465379
    [Abstract] [Full Text] [Related]

  • 12. Similarities and differences in genome-wide expression data of six organisms.
    Bergmann S, Ihmels J, Barkai N.
    PLoS Biol; 2004 Jan 23; 2(1):E9. PubMed ID: 14737187
    [Abstract] [Full Text] [Related]

  • 13. A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution.
    Harrison P, Kumar A, Lan N, Echols N, Snyder M, Gerstein M.
    J Mol Biol; 2002 Feb 22; 316(3):409-19. PubMed ID: 11866506
    [Abstract] [Full Text] [Related]

  • 14. Rescuing an essential enzyme-RNA complex with a non-essential appended domain.
    Whelihan EF, Schimmel P.
    EMBO J; 1997 May 15; 16(10):2968-74. PubMed ID: 9184240
    [Abstract] [Full Text] [Related]

  • 15. Network motif-based analysis of regulatory patterns in paralogous gene pairs.
    Melkus G, Rucevskis P, Celms E, Čerāns K, Freivalds K, Kikusts P, Lace L, Opmanis M, Rituma D, Viksna J.
    J Bioinform Comput Biol; 2020 Jun 15; 18(3):2040008. PubMed ID: 32698721
    [Abstract] [Full Text] [Related]

  • 16. Genetic structure and evolution of the Vps25 family, a yeast ESCRT-II component.
    Slater R, Bishop NE.
    BMC Evol Biol; 2006 Aug 04; 6():59. PubMed ID: 16889659
    [Abstract] [Full Text] [Related]

  • 17. Prevalent structural disorder in E. coli and S. cerevisiae proteomes.
    Tompa P, Dosztanyi Z, Simon I.
    J Proteome Res; 2006 Aug 04; 5(8):1996-2000. PubMed ID: 16889422
    [Abstract] [Full Text] [Related]

  • 18. Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data.
    Sharan R, Ideker T, Kelley B, Shamir R, Karp RM.
    J Comput Biol; 2005 Aug 04; 12(6):835-46. PubMed ID: 16108720
    [Abstract] [Full Text] [Related]

  • 19. Interaction network containing conserved and essential protein complexes in Escherichia coli.
    Butland G, Peregrín-Alvarez JM, Li J, Yang W, Yang X, Canadien V, Starostine A, Richards D, Beattie B, Krogan N, Davey M, Parkinson J, Greenblatt J, Emili A.
    Nature; 2005 Feb 03; 433(7025):531-7. PubMed ID: 15690043
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  • 20. The yeast mating-type switching endonuclease HO is a domesticated member of an unorthodox homing genetic element family.
    Coughlan AY, Lombardi L, Braun-Galleani S, Martos AA, Galeote V, Bigey F, Dequin S, Byrne KP, Wolfe KH.
    Elife; 2020 Apr 27; 9():. PubMed ID: 32338594
    [Abstract] [Full Text] [Related]

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