These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
5. Continuum solvation models in the linear interaction energy method. Carlsson J, Andér M, Nervall M, Aqvist J. J Phys Chem B; 2006 Jun 22; 110(24):12034-41. PubMed ID: 16800513 [Abstract] [Full Text] [Related]
8. Calculation of absolute ligand binding free energy to a ribosome-targeting protein as a function of solvent model. Lee MS, Olson MA. J Phys Chem B; 2008 Oct 23; 112(42):13411-7. PubMed ID: 18821791 [Abstract] [Full Text] [Related]
10. Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model. Vorobjev YN, Almagro JC, Hermans J. Proteins; 1998 Sep 01; 32(4):399-413. PubMed ID: 9726412 [Abstract] [Full Text] [Related]
11. Modeling loop reorganization free energies of acetylcholinesterase: a comparison of explicit and implicit solvent models. Olson MA. Proteins; 2004 Dec 01; 57(4):645-50. PubMed ID: 15481087 [Abstract] [Full Text] [Related]
15. Absolute and relative binding free energy calculations of the interaction of biotin and its analogs with streptavidin using molecular dynamics/free energy perturbation approaches. Miyamoto S, Kollman PA. Proteins; 1993 Jul 01; 16(3):226-45. PubMed ID: 8346190 [Abstract] [Full Text] [Related]