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Journal Abstract Search

800 related items for PubMed ID: 20403172

  • 1. OptFlux: an open-source software platform for in silico metabolic engineering.
    Rocha I, Maia P, Evangelista P, Vilaça P, Soares S, Pinto JP, Nielsen J, Patil KR, Ferreira EC, Rocha M.
    BMC Syst Biol; 2010 Apr 19; 4():45. PubMed ID: 20403172
    [Abstract] [Full Text] [Related]

  • 2. An integrated network visualization framework towards metabolic engineering applications.
    Noronha A, Vilaça P, Rocha M.
    BMC Bioinformatics; 2014 Dec 30; 15(1):420. PubMed ID: 25547011
    [Abstract] [Full Text] [Related]

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  • 4. Optimization approaches for the in silico discovery of optimal targets for gene over/underexpression.
    Gonçalves E, Pereira R, Rocha I, Rocha M.
    J Comput Biol; 2012 Feb 30; 19(2):102-14. PubMed ID: 22300313
    [Abstract] [Full Text] [Related]

  • 5. A computational tool for the simulation and optimization of microbial strains accounting integrated metabolic/regulatory information.
    Vilaça P, Rocha I, Rocha M.
    Biosystems; 2011 Mar 30; 103(3):435-41. PubMed ID: 21144882
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  • 7. CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data.
    Carreira R, Evangelista P, Maia P, Vilaça P, Pont M, Tomb JF, Rocha I, Rocha M.
    BMC Syst Biol; 2014 Dec 03; 8():123. PubMed ID: 25466481
    [Abstract] [Full Text] [Related]

  • 8. In silico strain optimization by adding reactions to metabolic models.
    Correia S, Rocha M.
    J Integr Bioinform; 2012 Jul 24; 9(3):202. PubMed ID: 22829573
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  • 10. Natural computation meta-heuristics for the in silico optimization of microbial strains.
    Rocha M, Maia P, Mendes R, Pinto JP, Ferreira EC, Nielsen J, Patil KR, Rocha I.
    BMC Bioinformatics; 2008 Nov 27; 9():499. PubMed ID: 19038030
    [Abstract] [Full Text] [Related]

  • 11. Fluxviz - Cytoscape plug-in for visualization of flux distributions in networks.
    König M, Holzhütter HG.
    Genome Inform; 2010 Nov 27; 24():96-103. PubMed ID: 22081592
    [Abstract] [Full Text] [Related]

  • 12. Software applications for flux balance analysis.
    Lakshmanan M, Koh G, Chung BK, Lee DY.
    Brief Bioinform; 2014 Jan 27; 15(1):108-22. PubMed ID: 23131418
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  • 13. FASIMU: flexible software for flux-balance computation series in large metabolic networks.
    Hoppe A, Hoffmann S, Gerasch A, Gille C, Holzhütter HG.
    BMC Bioinformatics; 2011 Jan 22; 12():28. PubMed ID: 21255455
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  • 15. YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities.
    Schwarz R, Musch P, von Kamp A, Engels B, Schirmer H, Schuster S, Dandekar T.
    BMC Bioinformatics; 2005 Jun 01; 6():135. PubMed ID: 15929789
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  • 17. Using bioconductor package BiGGR for metabolic flux estimation based on gene expression changes in brain.
    Gavai AK, Supandi F, Hettling H, Murrell P, Leunissen JA, van Beek JH.
    PLoS One; 2015 Jun 01; 10(3):e0119016. PubMed ID: 25806817
    [Abstract] [Full Text] [Related]

  • 18. Comparing methods for metabolic network analysis and an application to metabolic engineering.
    Tomar N, De RK.
    Gene; 2013 May 25; 521(1):1-14. PubMed ID: 23537990
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  • 20. ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis.
    Pitkänen E, Akerlund A, Rantanen A, Jouhten P, Ukkonen E.
    J Integr Bioinform; 2008 Aug 25; 5(2):. PubMed ID: 20134058
    [Abstract] [Full Text] [Related]

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