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449 related items for PubMed ID: 20429936

  • 1. GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.
    Risueño A, Fontanillo C, Dinger ME, De Las Rivas J.
    BMC Bioinformatics; 2010 Apr 29; 11():221. PubMed ID: 20429936
    [Abstract] [Full Text] [Related]

  • 2. Gene expression and isoform variation analysis using Affymetrix Exon Arrays.
    Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.
    BMC Genomics; 2008 Nov 07; 9():529. PubMed ID: 18990248
    [Abstract] [Full Text] [Related]

  • 3. Framework for reanalysis of publicly available Affymetrix® GeneChip® data sets based on functional regions of interest.
    Saka E, Harrison BJ, West K, Petruska JC, Rouchka EC.
    BMC Genomics; 2017 Dec 06; 18(Suppl 10):875. PubMed ID: 29244006
    [Abstract] [Full Text] [Related]

  • 4. X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis.
    Yates T, Okoniewski MJ, Miller CJ.
    Nucleic Acids Res; 2008 Jan 06; 36(Database issue):D780-6. PubMed ID: 17932061
    [Abstract] [Full Text] [Related]

  • 5. puma 3.0: improved uncertainty propagation methods for gene and transcript expression analysis.
    Liu X, Gao Z, Zhang L, Rattray M.
    BMC Bioinformatics; 2013 Feb 05; 14():39. PubMed ID: 23379655
    [Abstract] [Full Text] [Related]

  • 6. Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.
    Rambaldi D, Felice B, Praz V, Bucher P, Cittaro D, Guffanti A.
    BMC Bioinformatics; 2007 Mar 08; 8 Suppl 1(Suppl 1):S17. PubMed ID: 17430561
    [Abstract] [Full Text] [Related]

  • 7. rePROBE: Workflow for Revised Probe Assignment and Updated Probe-set Annotation in Microarrays.
    Hadlich F, Reyer H, Oster M, Trakooljul N, Muráni E, Ponsuksili S, Wimmers K.
    Genomics Proteomics Bioinformatics; 2021 Dec 08; 19(6):1043-1049. PubMed ID: 33581338
    [Abstract] [Full Text] [Related]

  • 8. Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: high-resolution annotation for microarrays.
    Lu J, Lee JC, Salit ML, Cam MC.
    BMC Bioinformatics; 2007 Mar 29; 8():108. PubMed ID: 17394657
    [Abstract] [Full Text] [Related]

  • 9. Integrating multiple genome annotation databases improves the interpretation of microarray gene expression data.
    Yin J, McLoughlin S, Jeffery IB, Glaviano A, Kennedy B, Higgins DG.
    BMC Genomics; 2010 Jan 20; 11():50. PubMed ID: 20089164
    [Abstract] [Full Text] [Related]

  • 10. A statistical method for predicting splice variants between two groups of samples using GeneChip expression array data.
    Fan W, Khalid N, Hallahan AR, Olson JM, Zhao LP.
    Theor Biol Med Model; 2006 Apr 07; 3():19. PubMed ID: 16603076
    [Abstract] [Full Text] [Related]

  • 11. Comprehensive survey of SNPs in the Affymetrix exon array using the 1000 Genomes dataset.
    Gamazon ER, Zhang W, Dolan ME, Cox NJ.
    PLoS One; 2010 Feb 23; 5(2):e9366. PubMed ID: 20186275
    [Abstract] [Full Text] [Related]

  • 12. A cross-platform comparison of genome-wide expression changes of laser microdissected lung tissue of C-Raf transgenic mice using 3'IVT and exon array.
    Londhe KB, Borlak J.
    PLoS One; 2012 Feb 23; 7(7):e40778. PubMed ID: 22815814
    [Abstract] [Full Text] [Related]

  • 13. Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation.
    Ha KCh, Coulombe-Huntington J, Majewski J.
    BMC Genomics; 2009 Nov 12; 10():519. PubMed ID: 19909511
    [Abstract] [Full Text] [Related]

  • 14. TIPMaP: a web server to establish transcript isoform profiles from reliable microarray probes.
    Chitturi N, Balagannavar G, Chandrashekar DS, Abinaya S, Srini VS, Acharya KK.
    BMC Genomics; 2013 Dec 27; 14():922. PubMed ID: 24373374
    [Abstract] [Full Text] [Related]

  • 15. A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.
    Alberts R, Terpstra P, Hardonk M, Bystrykh LV, de Haan G, Breitling R, Nap JP, Jansen RC.
    BMC Bioinformatics; 2007 Apr 20; 8():132. PubMed ID: 17448222
    [Abstract] [Full Text] [Related]

  • 16. BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments.
    Consiglio A, Carella M, De Caro G, Delle Foglie G, Giovannelli C, Grillo G, Ianigro M, Licciulli F, Palumbo O, Piepoli A, Ranieri E, Liuni S.
    BMC Bioinformatics; 2012 Mar 28; 13 Suppl 4(Suppl 4):S21. PubMed ID: 22536968
    [Abstract] [Full Text] [Related]

  • 17. Comparison of gene coverage of mouse oligonucleotide microarray platforms.
    Verdugo RA, Medrano JF.
    BMC Genomics; 2006 Mar 21; 7():58. PubMed ID: 16551360
    [Abstract] [Full Text] [Related]

  • 18. Analysis of DNA strand-specific differential expression with high density tiling microarrays.
    Quintales L, Sánchez M, Antequera F.
    BMC Bioinformatics; 2010 Mar 17; 11():136. PubMed ID: 20233458
    [Abstract] [Full Text] [Related]

  • 19. A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling.
    Bradford JR, Hey Y, Yates T, Li Y, Pepper SD, Miller CJ.
    BMC Genomics; 2010 May 05; 11():282. PubMed ID: 20444259
    [Abstract] [Full Text] [Related]

  • 20. Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray.
    He H, Wang J, Liu T, Liu XS, Li T, Wang Y, Qian Z, Zheng H, Zhu X, Wu T, Shi B, Deng W, Zhou W, Skogerbø G, Chen R.
    Genome Res; 2007 Oct 05; 17(10):1471-7. PubMed ID: 17785534
    [Abstract] [Full Text] [Related]

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