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449 related items for PubMed ID: 20429936

  • 21. GCSscore: an R package for differential gene expression analysis in Affymetrix/Thermo-Fisher whole transcriptome microarrays.
    Harris GM, Abbas S, Miles MF.
    BMC Genomics; 2021 Feb 01; 22(1):96. PubMed ID: 33522903
    [Abstract] [Full Text] [Related]

  • 22. AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.
    Liu H, Zeeberg BR, Qu G, Koru AG, Ferrucci A, Kahn A, Ryan MC, Nuhanovic A, Munson PJ, Reinhold WC, Kane DW, Weinstein JN.
    Bioinformatics; 2007 Sep 15; 23(18):2385-90. PubMed ID: 17660211
    [Abstract] [Full Text] [Related]

  • 23. Novel definition files for human GeneChips based on GeneAnnot.
    Ferrari F, Bortoluzzi S, Coppe A, Sirota A, Safran M, Shmoish M, Ferrari S, Lancet D, Danieli GA, Bicciato S.
    BMC Bioinformatics; 2007 Nov 15; 8():446. PubMed ID: 18005434
    [Abstract] [Full Text] [Related]

  • 24. Probe selection and expression index computation of Affymetrix Exon Arrays.
    Xing Y, Kapur K, Wong WH.
    PLoS One; 2006 Dec 20; 1(1):e88. PubMed ID: 17183719
    [Abstract] [Full Text] [Related]

  • 25. Equalizer reduces SNP bias in Affymetrix microarrays.
    Quigley D.
    BMC Bioinformatics; 2015 Jul 30; 16(1):238. PubMed ID: 26223252
    [Abstract] [Full Text] [Related]

  • 26. A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays.
    Yoshida R, Numata K, Imoto S, Nagasaki M, Doi A, Ueno K, Miyano S.
    Genome Inform; 2006 Jul 30; 17(1):88-99. PubMed ID: 17503359
    [Abstract] [Full Text] [Related]

  • 27. AffyMAPSDetector: a software tool to characterize Affymetrix GeneChip expression arrays with respect to SNPs.
    Kumari S, Verma LK, Weller JW.
    BMC Bioinformatics; 2007 Jul 30; 8():276. PubMed ID: 17663786
    [Abstract] [Full Text] [Related]

  • 28. Cross-hybridization modeling on Affymetrix exon arrays.
    Kapur K, Jiang H, Xing Y, Wong WH.
    Bioinformatics; 2008 Dec 15; 24(24):2887-93. PubMed ID: 18984598
    [Abstract] [Full Text] [Related]

  • 29. Micro-Analyzer: automatic preprocessing of Affymetrix microarray data.
    Guzzi PH, Cannataro M.
    Comput Methods Programs Biomed; 2013 Aug 15; 111(2):402-9. PubMed ID: 23731720
    [Abstract] [Full Text] [Related]

  • 30. Alternative mapping of probes to genes for Affymetrix chips.
    Gautier L, Møller M, Friis-Hansen L, Knudsen S.
    BMC Bioinformatics; 2004 Aug 14; 5():111. PubMed ID: 15310390
    [Abstract] [Full Text] [Related]

  • 31. In vitro identification and in silico utilization of interspecies sequence similarities using GeneChip technology.
    Grigoryev DN, Ma SF, Simon BA, Irizarry RA, Ye SQ, Garcia JG.
    BMC Genomics; 2005 May 04; 6():62. PubMed ID: 15871745
    [Abstract] [Full Text] [Related]

  • 32. Uncovering information on expression of natural antisense transcripts in Affymetrix MOE430 datasets.
    Oeder S, Mages J, Flicek P, Lang R.
    BMC Genomics; 2007 Jun 28; 8():200. PubMed ID: 17598913
    [Abstract] [Full Text] [Related]

  • 33. Computational discovery of human coding and non-coding transcripts with conserved splice sites.
    Rose D, Hiller M, Schutt K, Hackermüller J, Backofen R, Stadler PF.
    Bioinformatics; 2011 Jul 15; 27(14):1894-900. PubMed ID: 21622663
    [Abstract] [Full Text] [Related]

  • 34. Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.
    Dai M, Wang P, Boyd AD, Kostov G, Athey B, Jones EG, Bunney WE, Myers RM, Speed TP, Akil H, Watson SJ, Meng F.
    Nucleic Acids Res; 2005 Nov 10; 33(20):e175. PubMed ID: 16284200
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  • 35. easyExon--a Java-based GUI tool for processing and visualization of Affymetrix exon array data.
    Chang TY, Li YY, Jen CH, Yang TP, Lin CH, Hsu MT, Wang HW.
    BMC Bioinformatics; 2008 Oct 14; 9():432. PubMed ID: 18851762
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  • 36. Genome-wide analysis of antisense transcription with Affymetrix exon array.
    Ge X, Rubinstein WS, Jung YC, Wu Q.
    BMC Genomics; 2008 Jan 22; 9():27. PubMed ID: 18211689
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  • 37. A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array.
    Harbig J, Sprinkle R, Enkemann SA.
    Nucleic Acids Res; 2005 Feb 18; 33(3):e31. PubMed ID: 15722477
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  • 38. A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease.
    Raghavachari N, Barb J, Yang Y, Liu P, Woodhouse K, Levy D, O'Donnell CJ, Munson PJ, Kato GJ.
    BMC Med Genomics; 2012 Jun 29; 5():28. PubMed ID: 22747986
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  • 39. SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data.
    Diehn M, Sherlock G, Binkley G, Jin H, Matese JC, Hernandez-Boussard T, Rees CA, Cherry JM, Botstein D, Brown PO, Alizadeh AA.
    Nucleic Acids Res; 2003 Jan 01; 31(1):219-23. PubMed ID: 12519986
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  • 40. Affy exon tissues: exon levels in normal tissues in human, mouse and rat.
    Pohl AA, Sugnet CW, Clark TA, Smith K, Fujita PA, Cline MS.
    Bioinformatics; 2009 Sep 15; 25(18):2442-3. PubMed ID: 19570805
    [Abstract] [Full Text] [Related]

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