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Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

227 related items for PubMed ID: 20472540

  • 1. Interactive software tool to comprehend the calculation of optimal sequence alignments with dynamic programming.
    Ibarra IL, Melo F.
    Bioinformatics; 2010 Jul 01; 26(13):1664-5. PubMed ID: 20472540
    [Abstract] [Full Text] [Related]

  • 2. SBAL: a practical tool to generate and edit structure-based amino acid sequence alignments.
    Wang CK, Broder U, Weeratunga SK, Gasser RB, Loukas A, Hofmann A.
    Bioinformatics; 2012 Apr 01; 28(7):1026-7. PubMed ID: 22332239
    [Abstract] [Full Text] [Related]

  • 3. BioRuby: bioinformatics software for the Ruby programming language.
    Goto N, Prins P, Nakao M, Bonnal R, Aerts J, Katayama T.
    Bioinformatics; 2010 Oct 15; 26(20):2617-9. PubMed ID: 20739307
    [Abstract] [Full Text] [Related]

  • 4. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.
    Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T.
    Bioinformatics; 2009 Aug 01; 25(15):1972-3. PubMed ID: 19505945
    [Abstract] [Full Text] [Related]

  • 5. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.
    Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A.
    Bioinformatics; 2012 Jun 15; 28(12):1647-9. PubMed ID: 22543367
    [Abstract] [Full Text] [Related]

  • 6. Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments.
    Daily J.
    BMC Bioinformatics; 2016 Feb 10; 17():81. PubMed ID: 26864881
    [Abstract] [Full Text] [Related]

  • 7. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
    Ferrè F, Ponty Y, Lorenz WA, Clote P.
    Nucleic Acids Res; 2007 Jul 10; 35(Web Server issue):W659-68. PubMed ID: 17567620
    [Abstract] [Full Text] [Related]

  • 8. Alignment-Annotator web server: rendering and annotating sequence alignments.
    Gille C, Fähling M, Weyand B, Wieland T, Gille A.
    Nucleic Acids Res; 2014 Jul 10; 42(Web Server issue):W3-6. PubMed ID: 24813445
    [Abstract] [Full Text] [Related]

  • 9. EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes.
    Jeon YS, Lee K, Park SC, Kim BS, Cho YJ, Ha SM, Chun J.
    Int J Syst Evol Microbiol; 2014 Feb 10; 64(Pt 2):689-691. PubMed ID: 24425826
    [Abstract] [Full Text] [Related]

  • 10. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
    Bininda-Emonds OR.
    BMC Bioinformatics; 2005 Jun 22; 6():156. PubMed ID: 15969769
    [Abstract] [Full Text] [Related]

  • 11. Clustal W and Clustal X version 2.0.
    Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG.
    Bioinformatics; 2007 Nov 01; 23(21):2947-8. PubMed ID: 17846036
    [Abstract] [Full Text] [Related]

  • 12. Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words.
    Lin HN, Notredame C, Chang JM, Sung TY, Hsu WL.
    PLoS One; 2011 Nov 01; 6(12):e27872. PubMed ID: 22163274
    [Abstract] [Full Text] [Related]

  • 13. PR2ALIGN: a stand-alone software program and a web-server for protein sequence alignment using weighted biochemical properties of amino acids.
    Kuznetsov IB, McDuffie M.
    BMC Res Notes; 2015 May 07; 8():187. PubMed ID: 25947299
    [Abstract] [Full Text] [Related]

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  • 16. Heuristic reusable dynamic programming: efficient updates of local sequence alignment.
    Hong C, Tewfik AH.
    IEEE/ACM Trans Comput Biol Bioinform; 2009 May 07; 6(4):570-82. PubMed ID: 19875856
    [Abstract] [Full Text] [Related]

  • 17. ABC: software for interactive browsing of genomic multiple sequence alignment data.
    Cooper GM, Singaravelu SA, Sidow A.
    BMC Bioinformatics; 2004 Dec 08; 5():192. PubMed ID: 15588288
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  • 19. Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST).
    Dowd SE, Zaragoza J, Rodriguez JR, Oliver MJ, Payton PR.
    BMC Bioinformatics; 2005 Apr 08; 6():93. PubMed ID: 15819992
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