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Journal Abstract Search

171 related items for PubMed ID: 20529874

  • 1. Discovering protein-DNA binding sequence patterns using association rule mining.
    Leung KS, Wong KC, Chan TM, Wong MH, Lee KH, Lau CK, Tsui SK.
    Nucleic Acids Res; 2010 Oct; 38(19):6324-37. PubMed ID: 20529874
    [Abstract] [Full Text] [Related]

  • 2. Discovering approximate-associated sequence patterns for protein-DNA interactions.
    Chan TM, Wong KC, Lee KH, Wong MH, Lau CK, Tsui SK, Leung KS.
    Bioinformatics; 2011 Feb 15; 27(4):471-8. PubMed ID: 21193520
    [Abstract] [Full Text] [Related]

  • 3. LASAGNA: a novel algorithm for transcription factor binding site alignment.
    Lee C, Huang CH.
    BMC Bioinformatics; 2013 Mar 24; 14():108. PubMed ID: 23522376
    [Abstract] [Full Text] [Related]

  • 4. Subtypes of associated protein-DNA (Transcription Factor-Transcription Factor Binding Site) patterns.
    Chan TM, Leung KS, Lee KH, Wong MH, Lau TC, Tsui SK.
    Nucleic Acids Res; 2012 Oct 24; 40(19):9392-403. PubMed ID: 22904079
    [Abstract] [Full Text] [Related]

  • 5. Molecular and structural considerations of TF-DNA binding for the generation of biologically meaningful and accurate phylogenetic footprinting analysis: the LysR-type transcriptional regulator family as a study model.
    Oliver P, Peralta-Gil M, Tabche ML, Merino E.
    BMC Genomics; 2016 Aug 27; 17(1):686. PubMed ID: 27567672
    [Abstract] [Full Text] [Related]

  • 6. Discovering Binding Cores in Protein-DNA Binding Using Association Rule Mining with Statistical Measures.
    Wong MH, Sze-To HY, Lo LY, Chan TM, Leung KS.
    IEEE/ACM Trans Comput Biol Bioinform; 2015 Aug 27; 12(1):142-54. PubMed ID: 26357085
    [Abstract] [Full Text] [Related]

  • 7. Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co-localization within regulatory modules.
    Acevedo-Luna N, Mariño-Ramírez L, Halbert A, Hansen U, Landsman D, Spouge JL.
    BMC Bioinformatics; 2016 Nov 21; 17(1):479. PubMed ID: 27871221
    [Abstract] [Full Text] [Related]

  • 8. Modeling associated protein-DNA pattern discovery with unified scores.
    Chan TM, Lo LY, Sze-To HY, Leung KS, Xiao X, Wong MH.
    IEEE/ACM Trans Comput Biol Bioinform; 2013 Nov 21; 10(3):696-707. PubMed ID: 24091402
    [Abstract] [Full Text] [Related]

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  • 10. An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs.
    Garcia-Alcalde F, Blanco A, Shepherd AJ.
    BMC Bioinformatics; 2010 Nov 08; 11():551. PubMed ID: 21059262
    [Abstract] [Full Text] [Related]

  • 11. A balancing act in transcription regulation by response regulators: titration of transcription factor activity by decoy DNA binding sites.
    Gao R, Helfant LJ, Wu T, Li Z, Brokaw SE, Stock AM.
    Nucleic Acids Res; 2021 Nov 18; 49(20):11537-11549. PubMed ID: 34669947
    [Abstract] [Full Text] [Related]

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  • 13. Identifying functional transcription factor binding sites in yeast by considering their positional preference in the promoters.
    Lai FJ, Chiu CC, Yang TH, Huang YM, Wu WS.
    PLoS One; 2013 Nov 18; 8(12):e83791. PubMed ID: 24386279
    [Abstract] [Full Text] [Related]

  • 14. Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes.
    Afek A, Cohen H, Barber-Zucker S, Gordân R, Lukatsky DB.
    PLoS Comput Biol; 2015 Aug 18; 11(8):e1004429. PubMed ID: 26285121
    [Abstract] [Full Text] [Related]

  • 15. Identifying cooperative transcription factors in yeast using multiple data sources.
    Lai FJ, Jhu MH, Chiu CC, Huang YM, Wu WS.
    BMC Syst Biol; 2014 Aug 18; 8 Suppl 5(Suppl 5):S2. PubMed ID: 25559499
    [Abstract] [Full Text] [Related]

  • 16. Sequence features of DNA binding sites reveal structural class of associated transcription factor.
    Narlikar L, Hartemink AJ.
    Bioinformatics; 2006 Jan 15; 22(2):157-63. PubMed ID: 16267080
    [Abstract] [Full Text] [Related]

  • 17. Identification of co-occurring transcription factor binding sites from DNA sequence using clustered position weight matrices.
    Oh YM, Kim JK, Choi S, Yoo JY.
    Nucleic Acids Res; 2012 Mar 15; 40(5):e38. PubMed ID: 22187154
    [Abstract] [Full Text] [Related]

  • 18. Finding subtypes of transcription factor motif pairs with distinct regulatory roles.
    Bais AS, Kaminski N, Benos PV.
    Nucleic Acids Res; 2011 Jun 15; 39(11):e76. PubMed ID: 21486752
    [Abstract] [Full Text] [Related]

  • 19. Correlated evolution of transcription factors and their binding sites.
    Yang S, Yalamanchili HK, Li X, Yao KM, Sham PC, Zhang MQ, Wang J.
    Bioinformatics; 2011 Nov 01; 27(21):2972-8. PubMed ID: 21896508
    [Abstract] [Full Text] [Related]

  • 20. A feature-based approach to modeling protein-DNA interactions.
    Sharon E, Lubliner S, Segal E.
    PLoS Comput Biol; 2008 Aug 22; 4(8):e1000154. PubMed ID: 18725950
    [Abstract] [Full Text] [Related]

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