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399 related items for PubMed ID: 20552986
1. Hydration in discrete water. A mean field, cellular automata based approach to calculating hydration free energies. Setny P, Zacharias M. J Phys Chem B; 2010 Jul 08; 114(26):8667-75. PubMed ID: 20552986 [Abstract] [Full Text] [Related]
4. On the nonpolar hydration free energy of proteins: surface area and continuum solvent models for the solute-solvent interaction energy. Levy RM, Zhang LY, Gallicchio E, Felts AK. J Am Chem Soc; 2003 Aug 06; 125(31):9523-30. PubMed ID: 12889983 [Abstract] [Full Text] [Related]
10. Molecular density functional theory of solvation: from polar solvents to water. Zhao S, Ramirez R, Vuilleumier R, Borgis D. J Chem Phys; 2011 May 21; 134(19):194102. PubMed ID: 21599039 [Abstract] [Full Text] [Related]
11. How hydrophobic hydration responds to solute size and attractions: Theory and simulations. Athawale MV, Jamadagni SN, Garde S. J Chem Phys; 2009 Sep 21; 131(11):115102. PubMed ID: 19778151 [Abstract] [Full Text] [Related]
12. Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model. Vorobjev YN, Almagro JC, Hermans J. Proteins; 1998 Sep 01; 32(4):399-413. PubMed ID: 9726412 [Abstract] [Full Text] [Related]
16. AGBNP: an analytic implicit solvent model suitable for molecular dynamics simulations and high-resolution modeling. Gallicchio E, Levy RM. J Comput Chem; 2004 Mar 28; 25(4):479-99. PubMed ID: 14735568 [Abstract] [Full Text] [Related]
17. Prediction of SAMPL-1 hydration free energies using a continuum electrostatics-dispersion model. Sulea T, Wanapun D, Dennis S, Purisima EO. J Phys Chem B; 2009 Apr 09; 113(14):4511-20. PubMed ID: 19267492 [Abstract] [Full Text] [Related]
18. Solvation free energies of amino acid side chain analogs for common molecular mechanics water models. Shirts MR, Pande VS. J Chem Phys; 2005 Apr 01; 122(13):134508. PubMed ID: 15847482 [Abstract] [Full Text] [Related]