These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


Pubmed for Handhelds

PUBMED FOR HANDHELDS

Journal Abstract Search

544 related items for PubMed ID: 20576627

  • 1. MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.
    Liu Y, Schmidt B, Maskell DL.
    Bioinformatics; 2010 Aug 15; 26(16):1958-64. PubMed ID: 20576627
    [Abstract] [Full Text] [Related]

  • 2. Probalign: multiple sequence alignment using partition function posterior probabilities.
    Roshan U, Livesay DR.
    Bioinformatics; 2006 Nov 15; 22(22):2715-21. PubMed ID: 16954142
    [Abstract] [Full Text] [Related]

  • 3. Multiple protein sequence alignment with MSAProbs.
    Liu Y, Schmidt B.
    Methods Mol Biol; 2014 Nov 15; 1079():211-8. PubMed ID: 24170405
    [Abstract] [Full Text] [Related]

  • 4. SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.
    Zhou H, Zhou Y.
    Bioinformatics; 2005 Sep 15; 21(18):3615-21. PubMed ID: 16020471
    [Abstract] [Full Text] [Related]

  • 5. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Pei J, Grishin NV.
    Bioinformatics; 2007 Apr 01; 23(7):802-8. PubMed ID: 17267437
    [Abstract] [Full Text] [Related]

  • 6. Multiple sequence alignment.
    Edgar RC, Batzoglou S.
    Curr Opin Struct Biol; 2006 Jun 01; 16(3):368-73. PubMed ID: 16679011
    [Abstract] [Full Text] [Related]

  • 7. QuickProbs--a fast multiple sequence alignment algorithm designed for graphics processors.
    Gudyś A, Deorowicz S.
    PLoS One; 2014 Jun 01; 9(2):e88901. PubMed ID: 24586435
    [Abstract] [Full Text] [Related]

  • 8. MSAIndelFR: a scheme for multiple protein sequence alignment using information on indel flanking regions.
    Al-Shatnawi M, Ahmad MO, Swamy MN.
    BMC Bioinformatics; 2015 Nov 23; 16():393. PubMed ID: 26597571
    [Abstract] [Full Text] [Related]

  • 9. MSAProbs-MPI: parallel multiple sequence aligner for distributed-memory systems.
    González-Domínguez J, Liu Y, Touriño J, Schmidt B.
    Bioinformatics; 2016 Dec 15; 32(24):3826-3828. PubMed ID: 27638400
    [Abstract] [Full Text] [Related]

  • 10. Multiple sequence alignment using Probcons and Probalign.
    Roshan U.
    Methods Mol Biol; 2014 Dec 15; 1079():147-53. PubMed ID: 24170400
    [Abstract] [Full Text] [Related]

  • 11. eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities.
    Chikkagoudar S, Roshan U, Livesay D.
    Nucleic Acids Res; 2007 Jul 15; 35(Web Server issue):W675-7. PubMed ID: 17485479
    [Abstract] [Full Text] [Related]

  • 12. Multiple sequence alignment based on profile alignment of intermediate sequences.
    Lu Y, Sze SH.
    J Comput Biol; 2008 Sep 15; 15(7):767-77. PubMed ID: 18662101
    [Abstract] [Full Text] [Related]

  • 13. QOMA: quasi-optimal multiple alignment of protein sequences.
    Zhang X, Kahveci T.
    Bioinformatics; 2007 Jan 15; 23(2):162-8. PubMed ID: 17121778
    [Abstract] [Full Text] [Related]

  • 14. Improvement in the accuracy of multiple sequence alignment program MAFFT.
    Katoh K, Kuma K, Miyata T, Toh H.
    Genome Inform; 2005 Jan 15; 16(1):22-33. PubMed ID: 16362903
    [Abstract] [Full Text] [Related]

  • 15. MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts.
    Deng X, Cheng J.
    BMC Bioinformatics; 2011 Dec 14; 12():472. PubMed ID: 22168237
    [Abstract] [Full Text] [Related]

  • 16. ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function.
    Zhan Q, Wang N, Jin S, Tan R, Jiang Q, Wang Y.
    BMC Bioinformatics; 2019 Nov 25; 20(Suppl 18):573. PubMed ID: 31760933
    [Abstract] [Full Text] [Related]

  • 17. A comparison of scoring functions for protein sequence profile alignment.
    Edgar RC, Sjölander K.
    Bioinformatics; 2004 May 22; 20(8):1301-8. PubMed ID: 14962936
    [Abstract] [Full Text] [Related]

  • 18. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
    Bininda-Emonds OR.
    BMC Bioinformatics; 2005 Jun 22; 6():156. PubMed ID: 15969769
    [Abstract] [Full Text] [Related]

  • 19. Murlet: a practical multiple alignment tool for structural RNA sequences.
    Kiryu H, Tabei Y, Kin T, Asai K.
    Bioinformatics; 2007 Jul 01; 23(13):1588-98. PubMed ID: 17459961
    [Abstract] [Full Text] [Related]

  • 20. Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost.
    Yamada S, Gotoh O, Yamana H.
    BMC Bioinformatics; 2006 Dec 01; 7():524. PubMed ID: 17137519
    [Abstract] [Full Text] [Related]

    Page: [Next] [New Search]
    of 28.