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Journal Abstract Search

102 related items for PubMed ID: 2059852

  • 1. PROMOT: a FORTRAN program to scan protein sequences against a library of known motifs.
    Sternberg MJ.
    Comput Appl Biosci; 1991 Apr; 7(2):257-60. PubMed ID: 2059852
    [Abstract] [Full Text] [Related]

  • 2. Software tools for motif and pattern scanning: program descriptions including a universal sequence reading algorithm.
    Cockwell KY, Giles IG.
    Comput Appl Biosci; 1989 Jul; 5(3):227-32. PubMed ID: 2766008
    [Abstract] [Full Text] [Related]

  • 3. PdbMotif--a tool for the automatic identification and display of motifs in protein structures.
    Saqi MA, Sayle R.
    Comput Appl Biosci; 1994 Sep; 10(5):545-6. PubMed ID: 7828071
    [Abstract] [Full Text] [Related]

  • 4. Construction and analysis of a profile library characterizing groups of structurally known proteins.
    Ogiwara A, Uchiyama I, Takagi T, Kanehisa M.
    Protein Sci; 1996 Oct; 5(10):1991-9. PubMed ID: 8897599
    [Abstract] [Full Text] [Related]

  • 5. Finding flexible patterns in unaligned protein sequences.
    Jonassen I, Collins JF, Higgins DG.
    Protein Sci; 1995 Aug; 4(8):1587-95. PubMed ID: 8520485
    [Abstract] [Full Text] [Related]

  • 6. Conformational analysis of long spacers in PROSITE patterns.
    Lin KY, Wright J, Lim C.
    J Mol Biol; 2000 Jun 02; 299(2):537-48. PubMed ID: 10860757
    [Abstract] [Full Text] [Related]

  • 7. A structural study for the optimisation of functional motifs encoded in protein sequences.
    Via A, Helmer-Citterich M.
    BMC Bioinformatics; 2004 Apr 30; 5():50. PubMed ID: 15119965
    [Abstract] [Full Text] [Related]

  • 8. The PROSITE database.
    Hulo N, Bairoch A, Bulliard V, Cerutti L, De Castro E, Langendijk-Genevaux PS, Pagni M, Sigrist CJ.
    Nucleic Acids Res; 2006 Jan 01; 34(Database issue):D227-30. PubMed ID: 16381852
    [Abstract] [Full Text] [Related]

  • 9. ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins.
    de Castro E, Sigrist CJ, Gattiker A, Bulliard V, Langendijk-Genevaux PS, Gasteiger E, Bairoch A, Hulo N.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W362-5. PubMed ID: 16845026
    [Abstract] [Full Text] [Related]

  • 10. PROSITE: a documented database using patterns and profiles as motif descriptors.
    Sigrist CJ, Cerutti L, Hulo N, Gattiker A, Falquet L, Pagni M, Bairoch A, Bucher P.
    Brief Bioinform; 2002 Sep 01; 3(3):265-74. PubMed ID: 12230035
    [Abstract] [Full Text] [Related]

  • 11. Screening protein and nucleic acid sequences against libraries of patterns.
    Staden R.
    DNA Seq; 1991 Sep 01; 1(6):369-74. PubMed ID: 1768860
    [Abstract] [Full Text] [Related]

  • 12. Methods to define and locate patterns of motifs in sequences.
    Staden R.
    Comput Appl Biosci; 1988 Mar 01; 4(1):53-60. PubMed ID: 2898280
    [Abstract] [Full Text] [Related]

  • 13. Scan2S: increasing the precision of PROSITE pattern motifs using secondary structure constraints.
    Skrabanek L, Niv MY.
    Proteins; 2008 Sep 01; 72(4):1138-47. PubMed ID: 18320586
    [Abstract] [Full Text] [Related]

  • 14. Searching the protein structure databank with weak sequence patterns and structural constraints.
    Jonassen I, Eidhammer I, Grindhaug SH, Taylor WR.
    J Mol Biol; 2000 Dec 08; 304(4):599-619. PubMed ID: 11099383
    [Abstract] [Full Text] [Related]

  • 15. DNABIND: an interactive microcomputer program searching for nucleotide sequences that may code for conserved DNA-binding protein motifs.
    Mrázek J, Kypr J.
    Comput Appl Biosci; 1992 Aug 08; 8(4):401-4. PubMed ID: 1386773
    [Abstract] [Full Text] [Related]

  • 16. The value of prior knowledge in discovering motifs with MEME.
    Bailey TL, Elkan C.
    Proc Int Conf Intell Syst Mol Biol; 1995 Aug 08; 3():21-9. PubMed ID: 7584439
    [Abstract] [Full Text] [Related]

  • 17. XFINGER: a tool for searching and visualising protein fingerprints and patterns.
    Perkins DN, Attwood TK.
    Comput Appl Biosci; 1996 Apr 08; 12(2):89-94. PubMed ID: 8744771
    [Abstract] [Full Text] [Related]

  • 18. Methods for calculating the probabilities of finding patterns in sequences.
    Staden R.
    Comput Appl Biosci; 1989 Apr 08; 5(2):89-96. PubMed ID: 2720468
    [Abstract] [Full Text] [Related]

  • 19. Recent improvements to the PROSITE database.
    Hulo N, Sigrist CJ, Le Saux V, Langendijk-Genevaux PS, Bordoli L, Gattiker A, De Castro E, Bucher P, Bairoch A.
    Nucleic Acids Res; 2004 Jan 01; 32(Database issue):D134-7. PubMed ID: 14681377
    [Abstract] [Full Text] [Related]

  • 20. WebAllergen: a web server for predicting allergenic proteins.
    Riaz T, Hor HL, Krishnan A, Tang F, Li KB.
    Bioinformatics; 2005 May 15; 21(10):2570-1. PubMed ID: 15746289
    [Abstract] [Full Text] [Related]

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