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Journal Abstract Search

187 related items for PubMed ID: 20690690

  • 1. Molecular dynamics simulations shed light on the enthalpic and entropic driving forces that govern the sequence specific recognition between netropsin and DNA.
    Dolenc J, Gerster S, van Gunsteren WF.
    J Phys Chem B; 2010 Sep 02; 114(34):11164-72. PubMed ID: 20690690
    [Abstract] [Full Text] [Related]

  • 2. Molecular dynamics simulations and free energy calculations of netropsin and distamycin binding to an AAAAA DNA binding site.
    Dolenc J, Oostenbrink C, Koller J, van Gunsteren WF.
    Nucleic Acids Res; 2005 Sep 02; 33(2):725-33. PubMed ID: 15687382
    [Abstract] [Full Text] [Related]

  • 3. Binding of netropsin to several DNA constructs: evidence for at least two different 1:1 complexes formed from an -AATT-containing ds-DNA construct and a single minor groove binding ligand.
    Freyer MW, Buscaglia R, Cashman D, Hyslop S, Wilson WD, Chaires JB, Lewis EA.
    Biophys Chem; 2007 Mar 02; 126(1-3):186-96. PubMed ID: 16837123
    [Abstract] [Full Text] [Related]

  • 4. Energetic diversity of DNA minor-groove recognition by small molecules displayed through some model ligand-DNA systems.
    Lah J, Vesnaver G.
    J Mol Biol; 2004 Sep 03; 342(1):73-89. PubMed ID: 15313608
    [Abstract] [Full Text] [Related]

  • 5. Molecular modelling of the interaction of carbocyclic analogues of netropsin and distamycin with d(CGCGAATTCGCG)2.
    Bielawski K, Bielawska A, Bartulewicz D, Rózański A.
    Acta Biochim Pol; 2000 Sep 03; 47(3):855-66. PubMed ID: 11310985
    [Abstract] [Full Text] [Related]

  • 6. DNA-binding properties of nitroarene oligopeptides designed as hypoxia-selective agents.
    Jenkins TC, Parrick J, Porssa M.
    Anticancer Drug Des; 1994 Dec 03; 9(6):477-93. PubMed ID: 7880374
    [Abstract] [Full Text] [Related]

  • 7. Comparative thermodynamics for monomer and dimer sequence-dependent binding of a heterocyclic dication in the DNA minor groove.
    Wang L, Kumar A, Boykin DW, Bailly C, Wilson WD.
    J Mol Biol; 2002 Mar 29; 317(3):361-74. PubMed ID: 11922670
    [Abstract] [Full Text] [Related]

  • 8. Salt effects on ligand-DNA binding. Minor groove binding antibiotics.
    Misra VK, Sharp KA, Friedman RA, Honig B.
    J Mol Biol; 1994 Apr 29; 238(2):245-63. PubMed ID: 7512653
    [Abstract] [Full Text] [Related]

  • 9. Influence of netropsin's charges on the minor groove width of d(CGCGAATTCGCG)2.
    Wellenzohn B, Flader W, Winger RH, Hallbrucker A, Mayer E, Liedl KR.
    Biopolymers; 1994 Apr 29; 61(4):276-86. PubMed ID: 12115142
    [Abstract] [Full Text] [Related]

  • 10. Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site.
    Frank DE, Saecker RM, Bond JP, Capp MW, Tsodikov OV, Melcher SE, Levandoski MM, Record MT.
    J Mol Biol; 1997 Apr 18; 267(5):1186-206. PubMed ID: 9150406
    [Abstract] [Full Text] [Related]

  • 11. Netropsin binding to poly[d(IC)].poly[IC)] and poly[d(GC].poly[d(GC)]: a computer simulation.
    Gago F, Richards WG.
    Mol Pharmacol; 1990 Mar 18; 37(3):341-6. PubMed ID: 2156149
    [Abstract] [Full Text] [Related]

  • 12. Binding of netropsin and 4,6-diamidino-2-phenylindole to an A2T2 DNA hairpin: a comparison of biophysical techniques.
    Freyer MW, Buscaglia R, Nguyen B, Wilson WD, Lewis EA.
    Anal Biochem; 2006 Aug 15; 355(2):259-66. PubMed ID: 16828700
    [Abstract] [Full Text] [Related]

  • 13. Crystal structure of the DNA decamer d(CGCAATTGCG) complexed with the minor groove binding drug netropsin.
    Nunn CM, Garman E, Neidle S.
    Biochemistry; 1997 Apr 22; 36(16):4792-9. PubMed ID: 9125500
    [Abstract] [Full Text] [Related]

  • 14. DNA conformational effects on the interaction of netropsin with A-tract sequences.
    Degtyareva NN, Fresia MJ, Petty JT.
    Biochemistry; 2007 Dec 25; 46(51):15136-43. PubMed ID: 18044972
    [Abstract] [Full Text] [Related]

  • 15. Interaction identification of Zif268 and TATA(ZF) proteins with GC-/AT-rich DNA sequence: A theoretical study.
    Yang B, Zhu Y, Wang Y, Chen G.
    J Comput Chem; 2011 Feb 25; 32(3):416-28. PubMed ID: 20658568
    [Abstract] [Full Text] [Related]

  • 16. Assessment of enveloping distribution sampling to calculate relative free enthalpies of binding for eight netropsin-DNA duplex complexes in aqueous solution.
    Hansen N, Dolenc J, Knecht M, Riniker S, van Gunsteren WF.
    J Comput Chem; 2012 Mar 05; 33(6):640-51. PubMed ID: 22228455
    [Abstract] [Full Text] [Related]

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  • 19. The osmotic sensitivity of netropsin analogue binding to DNA.
    Sidorova NYu, Rau DC.
    Biopolymers; 1995 Apr 05; 35(4):377-84. PubMed ID: 7711278
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