These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. Performance evaluation of 2D fingerprint and 3D shape similarity methods in virtual screening. Hu G, Kuang G, Xiao W, Li W, Liu G, Tang Y. J Chem Inf Model; 2012 May 25; 52(5):1103-13. PubMed ID: 22551340 [Abstract] [Full Text] [Related]
3. LigMatch: a multiple structure-based ligand matching method for 3D virtual screening. Kinnings SL, Jackson RM. J Chem Inf Model; 2009 Sep 25; 49(9):2056-66. PubMed ID: 19685924 [Abstract] [Full Text] [Related]
4. Rendering conventional molecular fingerprints for virtual screening independent of molecular complexity and size effects. Nisius B, Bajorath J. ChemMedChem; 2010 Jun 07; 5(6):859-68. PubMed ID: 20425878 [Abstract] [Full Text] [Related]
8. Introduction of a generally applicable method to estimate retrieval of active molecules for similarity searching using fingerprints. Vogt M, Bajorath J. ChemMedChem; 2007 Sep 07; 2(9):1311-20. PubMed ID: 17562536 [Abstract] [Full Text] [Related]
9. Large-scale systematic analysis of 2D fingerprint methods and parameters to improve virtual screening enrichments. Sastry M, Lowrie JF, Dixon SL, Sherman W. J Chem Inf Model; 2010 May 24; 50(5):771-84. PubMed ID: 20450209 [Abstract] [Full Text] [Related]
13. Similarity metrics for ligands reflecting the similarity of the target proteins. Schuffenhauer A, Floersheim P, Acklin P, Jacoby E. J Chem Inf Comput Sci; 2003 May 24; 43(2):391-405. PubMed ID: 12653501 [Abstract] [Full Text] [Related]
14. Inverse frequency weighting of fragments for similarity-based virtual screening. Arif SM, Holliday JD, Willett P. J Chem Inf Model; 2010 Aug 23; 50(8):1340-9. PubMed ID: 20672867 [Abstract] [Full Text] [Related]
15. Random reduction in fingerprint bit density improves compound recall in search calculations using complex reference molecules. Wang Y, Geppert H, Bajorath J. Chem Biol Drug Des; 2008 Jun 23; 71(6):511-7. PubMed ID: 18466274 [Abstract] [Full Text] [Related]
16. Predicting the performance of fingerprint similarity searching. Vogt M, Bajorath J. Methods Mol Biol; 2011 Jun 23; 672():159-73. PubMed ID: 20838968 [Abstract] [Full Text] [Related]
17. Ligand-based virtual screening and in silico design of new antimalarial compounds using nonstochastic and stochastic total and atom-type quadratic maps. Marrero-Ponce Y, Iyarreta-Veitía M, Montero-Torres A, Romero-Zaldivar C, Brandt CA, Avila PE, Kirchgatter K, Machado Y. J Chem Inf Model; 2005 Jun 23; 45(4):1082-100. PubMed ID: 16045304 [Abstract] [Full Text] [Related]
18. Comparison of topological descriptors for similarity-based virtual screening using multiple bioactive reference structures. Hert J, Willett P, Wilton DJ, Acklin P, Azzaoui K, Jacoby E, Schuffenhauer A. Org Biomol Chem; 2004 Nov 21; 2(22):3256-66. PubMed ID: 15534703 [Abstract] [Full Text] [Related]