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Journal Abstract Search

238 related items for PubMed ID: 20927465

  • 1. Effects of the biological backbone on stacking interactions at DNA-protein interfaces: the interplay between the backbone···π and π···π components.
    Churchill CD, Rutledge LR, Wetmore SD.
    Phys Chem Chem Phys; 2010 Nov 21; 12(43):14515-26. PubMed ID: 20927465
    [Abstract] [Full Text] [Related]

  • 2. Effects of the biological backbone on DNA-protein stacking interactions.
    Churchill CD, Navarro-Whyte L, Rutledge LR, Wetmore SD.
    Phys Chem Chem Phys; 2009 Dec 07; 11(45):10657-70. PubMed ID: 20145810
    [Abstract] [Full Text] [Related]

  • 3. Effects of extending the computational model on DNA-protein T-shaped interactions: the case of adenine-histidine dimers.
    Rutledge LR, Navarro-Whyte L, Peterson TL, Wetmore SD.
    J Phys Chem A; 2011 Nov 17; 115(45):12646-58. PubMed ID: 21648440
    [Abstract] [Full Text] [Related]

  • 4. A preliminary investigation of the additivity of pi-pi or pi+-pi stacking and T-shaped interactions between natural or damaged DNA nucleobases and histidine.
    Rutledge LR, Churchill CD, Wetmore SD.
    J Phys Chem B; 2010 Mar 11; 114(9):3355-67. PubMed ID: 20151654
    [Abstract] [Full Text] [Related]

  • 5. Noncovalent interactions involving histidine: the effect of charge on pi-pi stacking and T-shaped interactions with the DNA nucleobases.
    Churchill CD, Wetmore SD.
    J Phys Chem B; 2009 Dec 10; 113(49):16046-58. PubMed ID: 19904910
    [Abstract] [Full Text] [Related]

  • 6. Extended weak bonding interactions in DNA: pi-stacking (base-base), base-backbone, and backbone-backbone interactions.
    Matta CF, Castillo N, Boyd RJ.
    J Phys Chem B; 2006 Jan 12; 110(1):563-78. PubMed ID: 16471569
    [Abstract] [Full Text] [Related]

  • 7. Evaluating how discrete water molecules affect protein-DNA π-π and π(+)-π stacking and T-shaped interactions: the case of histidine-adenine dimers.
    Leavens FM, Churchill CD, Wang S, Wetmore SD.
    J Phys Chem B; 2011 Sep 22; 115(37):10990-1003. PubMed ID: 21809837
    [Abstract] [Full Text] [Related]

  • 8. Effects of hydrogen-bonding and stacking interactions with amino acids on the acidity of uracil.
    Hunter KC, Millen AL, Wetmore SD.
    J Phys Chem B; 2007 Feb 22; 111(7):1858-71. PubMed ID: 17256895
    [Abstract] [Full Text] [Related]

  • 9. Characterization of nucleobase-amino acid stacking interactions utilized by a DNA repair enzyme.
    Rutledge LR, Campbell-Verduyn LS, Hunter KC, Wetmore SD.
    J Phys Chem B; 2006 Oct 05; 110(39):19652-63. PubMed ID: 17004834
    [Abstract] [Full Text] [Related]

  • 10. Structural analysis of cation-pi interactions in DNA binding proteins.
    Gromiha MM, Santhosh C, Ahmad S.
    Int J Biol Macromol; 2004 Jun 05; 34(3):203-11. PubMed ID: 15225993
    [Abstract] [Full Text] [Related]

  • 11. Contribution of cation-pi interactions to the stability of protein-DNA complexes.
    Wintjens R, Liévin J, Rooman M, Buisine E.
    J Mol Biol; 2000 Sep 15; 302(2):395-410. PubMed ID: 10970741
    [Abstract] [Full Text] [Related]

  • 12. DNA-protein π-interactions in nature: abundance, structure, composition and strength of contacts between aromatic amino acids and DNA nucleobases or deoxyribose sugar.
    Wilson KA, Kellie JL, Wetmore SD.
    Nucleic Acids Res; 2014 Jun 15; 42(10):6726-41. PubMed ID: 24744240
    [Abstract] [Full Text] [Related]

  • 13. Quantum-mechanical analysis of the energetic contributions to π stacking in nucleic acids versus rise, twist, and slide.
    Parker TM, Hohenstein EG, Parrish RM, Hud NV, Sherrill CD.
    J Am Chem Soc; 2013 Jan 30; 135(4):1306-16. PubMed ID: 23265256
    [Abstract] [Full Text] [Related]

  • 14. MP2, density functional theory, and molecular mechanical calculations of C-H...pi and hydrogen bond interactions in a cellulose-binding module-cellulose model system.
    Mohamed MN, Watts HD, Guo J, Catchmark JM, Kubicki JD.
    Carbohydr Res; 2010 Aug 16; 345(12):1741-51. PubMed ID: 20580346
    [Abstract] [Full Text] [Related]

  • 15. Landscape of π-π and sugar-π contacts in DNA-protein interactions.
    Wilson KA, Wells RA, Abendong MN, Anderson CB, Kung RW, Wetmore SD.
    J Biomol Struct Dyn; 2016 Aug 16; 34(1):184-200. PubMed ID: 25723403
    [Abstract] [Full Text] [Related]

  • 16. Close contacts between carbonyl oxygen atoms and aromatic centers in protein structures: pi...pi or lone-pair...pi interactions?
    Jain A, Purohit CS, Verma S, Sankararamakrishnan R.
    J Phys Chem B; 2007 Aug 02; 111(30):8680-3. PubMed ID: 17616223
    [Abstract] [Full Text] [Related]

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  • 18. Significant strength of charged DNA-protein π-π interactions: a preliminary study of cytosine.
    Wells RA, Kellie JL, Wetmore SD.
    J Phys Chem B; 2013 Sep 12; 117(36):10462-74. PubMed ID: 23991905
    [Abstract] [Full Text] [Related]

  • 19. Computational comparison of the stacking interactions between the aromatic amino acids and the natural or (cationic) methylated nucleobases.
    Rutledge LR, Durst HF, Wetmore SD.
    Phys Chem Chem Phys; 2008 May 21; 10(19):2801-12. PubMed ID: 18464997
    [Abstract] [Full Text] [Related]

  • 20. Interplay between halogen bonds and π-π stacking interactions: CSD search and theoretical study.
    Li H, Lu Y, Liu Y, Zhu X, Liu H, Zhu W.
    Phys Chem Chem Phys; 2012 Jul 28; 14(28):9948-55. PubMed ID: 22710562
    [Abstract] [Full Text] [Related]

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