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Journal Abstract Search

616 related items for PubMed ID: 21038907

  • 1. Protein simulations with an optimized water model: cooperative helix formation and temperature-induced unfolded state collapse.
    Best RB, Mittal J.
    J Phys Chem B; 2010 Nov 25; 114(46):14916-23. PubMed ID: 21038907
    [Abstract] [Full Text] [Related]

  • 2. Balance between alpha and beta structures in ab initio protein folding.
    Best RB, Mittal J.
    J Phys Chem B; 2010 Jul 08; 114(26):8790-8. PubMed ID: 20536262
    [Abstract] [Full Text] [Related]

  • 3. Structural and thermodynamics characters of isolated α-syn12 peptide: long-time temperature replica-exchange molecular dynamics in aqueous solution.
    Cao Z, Liu L, Wu P, Wang J.
    Acta Biochim Biophys Sin (Shanghai); 2011 Mar 08; 43(3):172-80. PubMed ID: 21289072
    [Abstract] [Full Text] [Related]

  • 4. Folding simulations of Trp-cage mini protein in explicit solvent using biasing potential replica-exchange molecular dynamics simulations.
    Kannan S, Zacharias M.
    Proteins; 2009 Aug 01; 76(2):448-60. PubMed ID: 19173315
    [Abstract] [Full Text] [Related]

  • 5. Helix-coil transition of alanine peptides in water: force field dependence on the folded and unfolded structures.
    Gnanakaran S, García AE.
    Proteins; 2005 Jun 01; 59(4):773-82. PubMed ID: 15815975
    [Abstract] [Full Text] [Related]

  • 6. Influence of water-protein hydrogen bonding on the stability of Trp-cage miniprotein. A comparison between the TIP3P and TIP4P-Ew water models.
    Paschek D, Day R, García AE.
    Phys Chem Chem Phys; 2011 Nov 28; 13(44):19840-7. PubMed ID: 21845272
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  • 8. Free energy landscape of protein folding in water: explicit vs. implicit solvent.
    Zhou R.
    Proteins; 2003 Nov 01; 53(2):148-61. PubMed ID: 14517967
    [Abstract] [Full Text] [Related]

  • 9. Free energy landscape and folding mechanism of a beta-hairpin in explicit water: a replica exchange molecular dynamics study.
    Nguyen PH, Stock G, Mittag E, Hu CK, Li MS.
    Proteins; 2005 Dec 01; 61(4):795-808. PubMed ID: 16240446
    [Abstract] [Full Text] [Related]

  • 10. Dissecting the stability of a beta-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the beta-turn and beta-strand contributions to folding.
    Griffiths-Jones SR, Maynard AJ, Searle MS.
    J Mol Biol; 1999 Oct 08; 292(5):1051-69. PubMed ID: 10512702
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  • 13. Molecular dynamics simulations of protein unfolding and limited refolding: characterization of partially unfolded states of ubiquitin in 60% methanol and in water.
    Alonso DO, Daggett V.
    J Mol Biol; 1995 Mar 31; 247(3):501-20. PubMed ID: 7714903
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  • 16. Equilibrium study of protein denaturation by urea.
    Canchi DR, Paschek D, García AE.
    J Am Chem Soc; 2010 Feb 24; 132(7):2338-44. PubMed ID: 20121105
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  • 18. Cooperative folding mechanism of a beta-hairpin peptide studied by a multicanonical replica-exchange molecular dynamics simulation.
    Yoda T, Sugita Y, Okamoto Y.
    Proteins; 2007 Mar 01; 66(4):846-59. PubMed ID: 17173285
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  • 19. Helix nucleation kinetics from molecular simulations in explicit solvent.
    Hummer G, García AE, Garde S.
    Proteins; 2001 Jan 01; 42(1):77-84. PubMed ID: 11093262
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