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Journal Abstract Search

165 related items for PubMed ID: 21045055

  • 1. YPA: an integrated repository of promoter features in Saccharomyces cerevisiae.
    Chang DT, Huang CY, Wu CY, Wu WS.
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D647-52. PubMed ID: 21045055
    [Abstract] [Full Text] [Related]

  • 2. Identifying functional transcription factor binding sites in yeast by considering their positional preference in the promoters.
    Lai FJ, Chiu CC, Yang TH, Huang YM, Wu WS.
    PLoS One; 2013 Jan; 8(12):e83791. PubMed ID: 24386279
    [Abstract] [Full Text] [Related]

  • 3. YGA: identifying distinct biological features between yeast gene sets.
    Chang DT, Li WS, Bai YH, Wu WS.
    Gene; 2013 Apr 10; 518(1):26-34. PubMed ID: 23266802
    [Abstract] [Full Text] [Related]

  • 4. Identifying cooperative transcription factors in yeast using multiple data sources.
    Lai FJ, Jhu MH, Chiu CC, Huang YM, Wu WS.
    BMC Syst Biol; 2014 Apr 10; 8 Suppl 5(Suppl 5):S2. PubMed ID: 25559499
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  • 6. A study on promoter characteristics of head-to-head genes in Saccharomyces cerevisiae.
    Chang DT, Wu CY, Fan CY.
    BMC Genomics; 2012 Apr 10; 13 Suppl 1(Suppl 1):S11. PubMed ID: 22369481
    [Abstract] [Full Text] [Related]

  • 7. Nucleosome organization in the vicinity of transcription factor binding sites in the human genome.
    Nie Y, Cheng X, Chen J, Sun X.
    BMC Genomics; 2014 Jun 19; 15(1):493. PubMed ID: 24942981
    [Abstract] [Full Text] [Related]

  • 8. The spatial distribution of cis regulatory elements in yeast promoters and its implications for transcriptional regulation.
    Lin Z, Wu WS, Liang H, Woo Y, Li WH.
    BMC Genomics; 2010 Oct 19; 11():581. PubMed ID: 20958978
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  • 10. GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group.
    Lee TY, Chang WC, Hsu JB, Chang TH, Shien DM.
    BMC Genomics; 2012 Oct 19; 13 Suppl 1(Suppl 1):S3. PubMed ID: 22369687
    [Abstract] [Full Text] [Related]

  • 11. Z curve theory-based analysis of the dynamic nature of nucleosome positioning in Saccharomyces cerevisiae.
    Wu X, Liu H, Liu H, Su J, Lv J, Cui Y, Wang F, Zhang Y.
    Gene; 2013 Nov 01; 530(1):8-18. PubMed ID: 23958656
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  • 15. Massively parallel synthetic promoter assays reveal the in vivo effects of binding site variants.
    Mogno I, Kwasnieski JC, Cohen BA.
    Genome Res; 2013 Nov 01; 23(11):1908-15. PubMed ID: 23921661
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  • 16. DNA structural features and architecture of promoter regions play a role in gene responsiveness of S. cerevisiae.
    Yella VR, Bansal M.
    J Bioinform Comput Biol; 2013 Dec 01; 11(6):1343001. PubMed ID: 24372030
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  • 18. Bioinformatic prediction of transcription factor binding sites at promoter regions of genes for photoperiod and vernalization responses in model and temperate cereal plants.
    Peng FY, Hu Z, Yang RC.
    BMC Genomics; 2016 Aug 08; 17():573. PubMed ID: 27503086
    [Abstract] [Full Text] [Related]

  • 19. Ceres: software for the integrated analysis of transcription factor binding sites and nucleosome positions in Saccharomyces cerevisiae.
    Morris RT, O'Connor TR, Wyrick JJ.
    Bioinformatics; 2010 Jan 15; 26(2):168-74. PubMed ID: 19959498
    [Abstract] [Full Text] [Related]

  • 20. SCPD: a promoter database of the yeast Saccharomyces cerevisiae.
    Zhu J, Zhang MQ.
    Bioinformatics; 1999 Jan 15; 15(7-8):607-11. PubMed ID: 10487868
    [Abstract] [Full Text] [Related]

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