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Journal Abstract Search

165 related items for PubMed ID: 21045055

  • 41. TRED: a transcriptional regulatory element database, new entries and other development.
    Jiang C, Xuan Z, Zhao F, Zhang MQ.
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D137-40. PubMed ID: 17202159
    [Abstract] [Full Text] [Related]

  • 42. Low nucleosome occupancy is encoded around functional human transcription factor binding sites.
    Daenen F, van Roy F, De Bleser PJ.
    BMC Genomics; 2008 Jul 15; 9():332. PubMed ID: 18627598
    [Abstract] [Full Text] [Related]

  • 43. Promoter-proximal transcription factor binding is transcriptionally active when coupled with nucleosome repositioning in immediate vicinity.
    Yadav VK, Thakur RK, Eckloff B, Baral A, Singh A, Halder R, Kumar A, Alam MP, Kundu TK, Pandita R, Pandita TK, Wieben ED, Chowdhury S.
    Nucleic Acids Res; 2014 Sep 15; 42(15):9602-11. PubMed ID: 25081206
    [Abstract] [Full Text] [Related]

  • 44. SiteSeer: Visualisation and analysis of transcription factor binding sites in nucleotide sequences.
    Boardman PE, Oliver SG, Hubbard SJ.
    Nucleic Acids Res; 2003 Jul 01; 31(13):3572-5. PubMed ID: 12824368
    [Abstract] [Full Text] [Related]

  • 45. Properly defining the targets of a transcription factor significantly improves the computational identification of cooperative transcription factor pairs in yeast.
    Wu WS, Lai FJ.
    BMC Genomics; 2015 Jul 01; 16 Suppl 12(Suppl 12):S10. PubMed ID: 26679776
    [Abstract] [Full Text] [Related]

  • 46. Computational analysis of promoter elements and chromatin features in yeast.
    Wyrick JJ.
    Methods Mol Biol; 2012 Jul 01; 809():217-35. PubMed ID: 22113279
    [Abstract] [Full Text] [Related]

  • 47. Differential effects of chromatin regulators and transcription factors on gene regulation: a nucleosomal perspective.
    Dong D, Shao X, Zhang Z.
    Bioinformatics; 2011 Jan 15; 27(2):147-52. PubMed ID: 21075748
    [Abstract] [Full Text] [Related]

  • 48. Backup transcription factor binding sites protect human genes from mutations in the promoter.
    Brown JC.
    PLoS One; 2023 Jan 15; 18(8):e0281569. PubMed ID: 37651425
    [Abstract] [Full Text] [Related]

  • 49. Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes.
    Afek A, Cohen H, Barber-Zucker S, Gordân R, Lukatsky DB.
    PLoS Comput Biol; 2015 Aug 15; 11(8):e1004429. PubMed ID: 26285121
    [Abstract] [Full Text] [Related]

  • 50. Integrating genomic data to predict transcription factor binding.
    Holloway DT, Kon M, DeLisi C.
    Genome Inform; 2005 Aug 15; 16(1):83-94. PubMed ID: 16362910
    [Abstract] [Full Text] [Related]

  • 51. Impact of DNA-binding position variants on yeast gene expression.
    Swamy KB, Cho CY, Chiang S, Tsai ZT, Tsai HK.
    Nucleic Acids Res; 2009 Nov 15; 37(21):6991-7001. PubMed ID: 19767613
    [Abstract] [Full Text] [Related]

  • 52. Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast.
    Tsai ZT, Shiu SH, Tsai HK.
    PLoS Comput Biol; 2015 Aug 15; 11(8):e1004418. PubMed ID: 26291518
    [Abstract] [Full Text] [Related]

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  • 56. A high-resolution atlas of nucleosome occupancy in yeast.
    Lee W, Tillo D, Bray N, Morse RH, Davis RW, Hughes TR, Nislow C.
    Nat Genet; 2007 Oct 15; 39(10):1235-44. PubMed ID: 17873876
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  • 57. A balancing act in transcription regulation by response regulators: titration of transcription factor activity by decoy DNA binding sites.
    Gao R, Helfant LJ, Wu T, Li Z, Brokaw SE, Stock AM.
    Nucleic Acids Res; 2021 Nov 18; 49(20):11537-11549. PubMed ID: 34669947
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  • 60. Co-expression of adjacent genes in yeast cannot be simply attributed to shared regulatory system.
    Tsai HK, Su CP, Lu MY, Shih CH, Wang D.
    BMC Genomics; 2007 Oct 03; 8():352. PubMed ID: 17910772
    [Abstract] [Full Text] [Related]

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