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Journal Abstract Search

311 related items for PubMed ID: 21078182

  • 1. An improved method for scoring protein-protein interactions using semantic similarity within the gene ontology.
    Jain S, Bader GD.
    BMC Bioinformatics; 2010 Nov 15; 11():562. PubMed ID: 21078182
    [Abstract] [Full Text] [Related]

  • 2. Assessment of Semantic Similarity between Proteins Using Information Content and Topological Properties of the Gene Ontology Graph.
    Dutta P, Basu S, Kundu M.
    IEEE/ACM Trans Comput Biol Bioinform; 2018 Nov 15; 15(3):839-849. PubMed ID: 28371781
    [Abstract] [Full Text] [Related]

  • 3. GO functional similarity clustering depends on similarity measure, clustering method, and annotation completeness.
    Liu M, Thomas PD.
    BMC Bioinformatics; 2019 Mar 27; 20(1):155. PubMed ID: 30917779
    [Abstract] [Full Text] [Related]

  • 4. An improved approach to infer protein-protein interaction based on a hierarchical vector space model.
    Zhang J, Jia K, Jia J, Qian Y.
    BMC Bioinformatics; 2018 Apr 27; 19(1):161. PubMed ID: 29699476
    [Abstract] [Full Text] [Related]

  • 5. Comparative analysis of gene ontology-based semantic similarity measurements for the application of identifying essential proteins.
    Xue X, Zhang W, Fan A.
    PLoS One; 2023 Apr 27; 18(4):e0284274. PubMed ID: 37083829
    [Abstract] [Full Text] [Related]

  • 6. Multi-Factored Gene-Gene Proximity Measures Exploiting Biological Knowledge Extracted from Gene Ontology: Application in Gene Clustering.
    Acharya S, Saha S, Pradhan P.
    IEEE/ACM Trans Comput Biol Bioinform; 2020 Apr 27; 17(1):207-219. PubMed ID: 29994130
    [Abstract] [Full Text] [Related]

  • 7. A graph-based semantic similarity measure for the gene ontology.
    Alvarez MA, Yan C.
    J Bioinform Comput Biol; 2011 Dec 27; 9(6):681-95. PubMed ID: 22084008
    [Abstract] [Full Text] [Related]

  • 8. Interspecies gene function prediction using semantic similarity.
    Yu G, Luo W, Fu G, Wang J.
    BMC Syst Biol; 2016 Dec 23; 10(Suppl 4):121. PubMed ID: 28155711
    [Abstract] [Full Text] [Related]

  • 9. A relation based measure of semantic similarity for Gene Ontology annotations.
    Sheehan B, Quigley A, Gaudin B, Dobson S.
    BMC Bioinformatics; 2008 Nov 04; 9():468. PubMed ID: 18983678
    [Abstract] [Full Text] [Related]

  • 10. Evaluating the effect of annotation size on measures of semantic similarity.
    Kulmanov M, Hoehndorf R.
    J Biomed Semantics; 2017 Feb 13; 8(1):7. PubMed ID: 28193260
    [Abstract] [Full Text] [Related]

  • 11. IntelliGO: a new vector-based semantic similarity measure including annotation origin.
    Benabderrahmane S, Smail-Tabbone M, Poch O, Napoli A, Devignes MD.
    BMC Bioinformatics; 2010 Dec 01; 11():588. PubMed ID: 21122125
    [Abstract] [Full Text] [Related]

  • 12. TopoICSim: a new semantic similarity measure based on gene ontology.
    Ehsani R, Drabløs F.
    BMC Bioinformatics; 2016 Jul 29; 17(1):296. PubMed ID: 27473391
    [Abstract] [Full Text] [Related]

  • 13. Improving GO semantic similarity measures by exploring the ontology beneath the terms and modelling uncertainty.
    Yang H, Nepusz T, Paccanaro A.
    Bioinformatics; 2012 May 15; 28(10):1383-9. PubMed ID: 22522134
    [Abstract] [Full Text] [Related]

  • 14. Improving automatic GO annotation with semantic similarity.
    Sarker B, Khare N, Devignes MD, Aridhi S.
    BMC Bioinformatics; 2022 Dec 12; 23(Suppl 2):433. PubMed ID: 36510133
    [Abstract] [Full Text] [Related]

  • 15. Exploring information from the topology beneath the Gene Ontology terms to improve semantic similarity measures.
    Zhang SB, Lai JH.
    Gene; 2016 Jul 15; 586(1):148-57. PubMed ID: 27080954
    [Abstract] [Full Text] [Related]

  • 16. Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets.
    Zhou H, Wong L.
    BMC Genomics; 2011 Nov 30; 12 Suppl 3(Suppl 3):S20. PubMed ID: 22369691
    [Abstract] [Full Text] [Related]

  • 17. Investigating Correlation between Protein Sequence Similarity and Semantic Similarity Using Gene Ontology Annotations.
    Ikram N, Qadir MA, Afzal MT.
    IEEE/ACM Trans Comput Biol Bioinform; 2018 Nov 30; 15(3):905-912. PubMed ID: 28436885
    [Abstract] [Full Text] [Related]

  • 18. GO2Vec: transforming GO terms and proteins to vector representations via graph embeddings.
    Zhong X, Kaalia R, Rajapakse JC.
    BMC Genomics; 2019 Dec 24; 20(Suppl 9):918. PubMed ID: 31874639
    [Abstract] [Full Text] [Related]

  • 19. Impact of low-confidence interactions on computational identification of protein complexes.
    Paul M, Anand A.
    J Bioinform Comput Biol; 2020 Aug 24; 18(4):2050025. PubMed ID: 32757809
    [Abstract] [Full Text] [Related]

  • 20. Correlation between gene expression and GO semantic similarity.
    Sevilla JL, Segura V, Podhorski A, Guruceaga E, Mato JM, Martínez-Cruz LA, Corrales FJ, Rubio A.
    IEEE/ACM Trans Comput Biol Bioinform; 2005 Aug 24; 2(4):330-8. PubMed ID: 17044170
    [Abstract] [Full Text] [Related]

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