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Journal Abstract Search

455 related items for PubMed ID: 21082435

  • 1. Software pipeline and data analysis for MS/MS proteomics: the trans-proteomic pipeline.
    Keller A, Shteynberg D.
    Methods Mol Biol; 2011; 694():169-89. PubMed ID: 21082435
    [Abstract] [Full Text] [Related]

  • 2. Quantitative proteomics using uniform (15)N-labeling, MASCOT, and the trans-proteomic pipeline.
    Palmblad M, Bindschedler LV, Cramer R.
    Proteomics; 2007 Oct; 7(19):3462-9. PubMed ID: 17726679
    [Abstract] [Full Text] [Related]

  • 3. Development and validation of a spectral library searching method for peptide identification from MS/MS.
    Lam H, Deutsch EW, Eddes JS, Eng JK, King N, Stein SE, Aebersold R.
    Proteomics; 2007 Mar; 7(5):655-67. PubMed ID: 17295354
    [Abstract] [Full Text] [Related]

  • 4. Global quantitative proteomic profiling through 18O-labeling in combination with MS/MS spectra analysis.
    White CA, Oey N, Emili A.
    J Proteome Res; 2009 Jul; 8(7):3653-65. PubMed ID: 19400582
    [Abstract] [Full Text] [Related]

  • 5. Trans-proteomic pipeline: a pipeline for proteomic analysis.
    Pedrioli PG.
    Methods Mol Biol; 2010 Jul; 604():213-38. PubMed ID: 20013374
    [Abstract] [Full Text] [Related]

  • 6. Automated generic analysis tools for protein quantitation using stable isotope labeling.
    Hsu WL, Sung TY.
    Methods Mol Biol; 2010 Jul; 604():257-72. PubMed ID: 20013376
    [Abstract] [Full Text] [Related]

  • 7. MSQuant, an open source platform for mass spectrometry-based quantitative proteomics.
    Mortensen P, Gouw JW, Olsen JV, Ong SE, Rigbolt KT, Bunkenborg J, Cox J, Foster LJ, Heck AJ, Blagoev B, Andersen JS, Mann M.
    J Proteome Res; 2010 Jan; 9(1):393-403. PubMed ID: 19888749
    [Abstract] [Full Text] [Related]

  • 8. ProteinQuant Suite: a bundle of automated software tools for label-free quantitative proteomics.
    Mann B, Madera M, Sheng Q, Tang H, Mechref Y, Novotny MV.
    Rapid Commun Mass Spectrom; 2008 Dec; 22(23):3823-34. PubMed ID: 18985620
    [Abstract] [Full Text] [Related]

  • 9. Compid: a new software tool to integrate and compare MS/MS based protein identification results from Mascot and Paragon.
    Lietzén N, Natri L, Nevalainen OS, Salmi J, Nyman TA.
    J Proteome Res; 2010 Dec 03; 9(12):6795-800. PubMed ID: 20973569
    [Abstract] [Full Text] [Related]

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  • 11. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
    Matthiesen R, Trelle MB, Højrup P, Bunkenborg J, Jensen ON.
    J Proteome Res; 2005 Dec 03; 4(6):2338-47. PubMed ID: 16335983
    [Abstract] [Full Text] [Related]

  • 12. CHOMPER: a bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high-throughput proteomic strategies.
    Eddes JS, Kapp EA, Frecklington DF, Connolly LM, Layton MJ, Moritz RL, Simpson RJ.
    Proteomics; 2002 Sep 03; 2(9):1097-103. PubMed ID: 12362328
    [Abstract] [Full Text] [Related]

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  • 15. An iterative strategy for precursor ion selection for LC-MS/MS based shotgun proteomics.
    Zerck A, Nordhoff E, Resemann A, Mirgorodskaya E, Suckau D, Reinert K, Lehrach H, Gobom J.
    J Proteome Res; 2009 Jul 03; 8(7):3239-51. PubMed ID: 19402737
    [Abstract] [Full Text] [Related]

  • 16. MapQuant: open-source software for large-scale protein quantification.
    Leptos KC, Sarracino DA, Jaffe JD, Krastins B, Church GM.
    Proteomics; 2006 Mar 03; 6(6):1770-82. PubMed ID: 16470651
    [Abstract] [Full Text] [Related]

  • 17. Identification and quantification of protein carbonylation using light and heavy isotope labeled Girard's P reagent.
    Mirzaei H, Regnier F.
    J Chromatogr A; 2006 Nov 17; 1134(1-2):122-33. PubMed ID: 16996067
    [Abstract] [Full Text] [Related]

  • 18. GAPP: a fully automated software for the confident identification of human peptides from tandem mass spectra.
    Shadforth I, Xu W, Crowther D, Bessant C.
    J Proteome Res; 2006 Oct 17; 5(10):2849-52. PubMed ID: 17022656
    [Abstract] [Full Text] [Related]

  • 19. TOPPView: an open-source viewer for mass spectrometry data.
    Sturm M, Kohlbacher O.
    J Proteome Res; 2009 Jul 17; 8(7):3760-3. PubMed ID: 19425593
    [Abstract] [Full Text] [Related]

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