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584 related items for PubMed ID: 21131968

  • 1. SAINT: probabilistic scoring of affinity purification-mass spectrometry data.
    Choi H, Larsen B, Lin ZY, Breitkreutz A, Mellacheruvu D, Fermin D, Qin ZS, Tyers M, Gingras AC, Nesvizhskii AI.
    Nat Methods; 2011 Jan; 8(1):70-3. PubMed ID: 21131968
    [Abstract] [Full Text] [Related]

  • 2. Analyzing protein-protein interactions from affinity purification-mass spectrometry data with SAINT.
    Choi H, Liu G, Mellacheruvu D, Tyers M, Gingras AC, Nesvizhskii AI.
    Curr Protoc Bioinformatics; 2012 Sep; Chapter 8():8.15.1-8.15.23. PubMed ID: 22948729
    [Abstract] [Full Text] [Related]

  • 3. SAINT-MS1: protein-protein interaction scoring using label-free intensity data in affinity purification-mass spectrometry experiments.
    Choi H, Glatter T, Gstaiger M, Nesvizhskii AI.
    J Proteome Res; 2012 Apr 06; 11(4):2619-24. PubMed ID: 22352807
    [Abstract] [Full Text] [Related]

  • 4. SAINTexpress: improvements and additional features in Significance Analysis of INTeractome software.
    Teo G, Liu G, Zhang J, Nesvizhskii AI, Gingras AC, Choi H.
    J Proteomics; 2014 Apr 04; 100():37-43. PubMed ID: 24513533
    [Abstract] [Full Text] [Related]

  • 5. SAINTq: Scoring protein-protein interactions in affinity purification - mass spectrometry experiments with fragment or peptide intensity data.
    Teo G, Koh H, Fermin D, Lambert JP, Knight JD, Gingras AC, Choi H.
    Proteomics; 2016 Aug 04; 16(15-16):2238-45. PubMed ID: 27119218
    [Abstract] [Full Text] [Related]

  • 6. Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments.
    Nesvizhskii AI.
    Proteomics; 2012 May 04; 12(10):1639-55. PubMed ID: 22611043
    [Abstract] [Full Text] [Related]

  • 7. ROCS: a reproducibility index and confidence score for interaction proteomics studies.
    Dazard JE, Saha S, Ewing RM.
    BMC Bioinformatics; 2012 Jun 08; 13():128. PubMed ID: 22682516
    [Abstract] [Full Text] [Related]

  • 8. Mapping Protein-Protein Interactions Using Affinity Purification and Mass Spectrometry.
    Lee CM, Adamchek C, Feke A, Nusinow DA, Gendron JM.
    Methods Mol Biol; 2017 Jun 08; 1610():231-249. PubMed ID: 28439867
    [Abstract] [Full Text] [Related]

  • 9. A novel scoring approach for protein co-purification data reveals high interaction specificity.
    Yu X, Ivanic J, Wallqvist A, Reifman J.
    PLoS Comput Biol; 2009 Sep 08; 5(9):e1000515. PubMed ID: 19779545
    [Abstract] [Full Text] [Related]

  • 10. Computational detection of protein complexes in AP-MS experiments.
    Choi H.
    Proteomics; 2012 May 08; 12(10):1663-8. PubMed ID: 22711593
    [Abstract] [Full Text] [Related]

  • 11. Data Independent Acquisition analysis in ProHits 4.0.
    Liu G, Knight JD, Zhang JP, Tsou CC, Wang J, Lambert JP, Larsen B, Tyers M, Raught B, Bandeira N, Nesvizhskii AI, Choi H, Gingras AC.
    J Proteomics; 2016 Oct 21; 149():64-68. PubMed ID: 27132685
    [Abstract] [Full Text] [Related]

  • 12. Affinity-purification coupled to mass spectrometry: basic principles and strategies.
    Dunham WH, Mullin M, Gingras AC.
    Proteomics; 2012 May 21; 12(10):1576-90. PubMed ID: 22611051
    [Abstract] [Full Text] [Related]

  • 13. A sampling framework for incorporating quantitative mass spectrometry data in protein interaction analysis.
    Tucker G, Loh PR, Berger B.
    BMC Bioinformatics; 2013 Oct 04; 14():299. PubMed ID: 24093595
    [Abstract] [Full Text] [Related]

  • 14. The CRAPome: a contaminant repository for affinity purification-mass spectrometry data.
    Mellacheruvu D, Wright Z, Couzens AL, Lambert JP, St-Denis NA, Li T, Miteva YV, Hauri S, Sardiu ME, Low TY, Halim VA, Bagshaw RD, Hubner NC, Al-Hakim A, Bouchard A, Faubert D, Fermin D, Dunham WH, Goudreault M, Lin ZY, Badillo BG, Pawson T, Durocher D, Coulombe B, Aebersold R, Superti-Furga G, Colinge J, Heck AJ, Choi H, Gstaiger M, Mohammed S, Cristea IM, Bennett KL, Washburn MP, Raught B, Ewing RM, Gingras AC, Nesvizhskii AI.
    Nat Methods; 2013 Aug 04; 10(8):730-6. PubMed ID: 23921808
    [Abstract] [Full Text] [Related]

  • 15. Combined proximity labeling and affinity purification-mass spectrometry workflow for mapping and visualizing protein interaction networks.
    Liu X, Salokas K, Weldatsadik RG, Gawriyski L, Varjosalo M.
    Nat Protoc; 2020 Oct 04; 15(10):3182-3211. PubMed ID: 32778839
    [Abstract] [Full Text] [Related]

  • 16. Parallel Exploration of Interaction Space by BioID and Affinity Purification Coupled to Mass Spectrometry.
    Hesketh GG, Youn JY, Samavarchi-Tehrani P, Raught B, Gingras AC.
    Methods Mol Biol; 2017 Oct 04; 1550():115-136. PubMed ID: 28188527
    [Abstract] [Full Text] [Related]

  • 17. In vivo cross-linking-based affinity purification and mass spectrometry for targeting intracellular protein-protein interactions.
    Zhong B, An Y, Gao H, Zhao L, Li X, Liang Z, Zhang Y, Zhao Q, Zhang L.
    Anal Chim Acta; 2023 Jul 18; 1265():341273. PubMed ID: 37230567
    [Abstract] [Full Text] [Related]

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  • 19. Affinity purification-mass spectrometry and network analysis to understand protein-protein interactions.
    Morris JH, Knudsen GM, Verschueren E, Johnson JR, Cimermancic P, Greninger AL, Pico AR.
    Nat Protoc; 2014 Nov 18; 9(11):2539-54. PubMed ID: 25275790
    [Abstract] [Full Text] [Related]

  • 20. Protocol for affinity purification-mass spectrometry interactome profiling in larvae of Drosophila melanogaster.
    Guo Y, Hartson SD, Rogers J, Brooks-Kanost L, Brooks D, Geisbrecht ER.
    STAR Protoc; 2024 Jun 21; 5(2):103064. PubMed ID: 38743568
    [Abstract] [Full Text] [Related]

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