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Journal Abstract Search

81 related items for PubMed ID: 21182200

  • 1. Combining peptide recognition specificity and context information for the prediction of the 14-3-3-mediated interactome in S. cerevisiae and H. sapiens.
    Panni S, Montecchi-Palazzi L, Kiemer L, Cabibbo A, Paoluzi S, Santonico E, Landgraf C, Volkmer-Engert R, Bachi A, Castagnoli L, Cesareni G.
    Proteomics; 2011 Jan; 11(1):128-43. PubMed ID: 21182200
    [Abstract] [Full Text] [Related]

  • 2. Probabilistic prediction and ranking of human protein-protein interactions.
    Scott MS, Barton GJ.
    BMC Bioinformatics; 2007 Jul 05; 8():239. PubMed ID: 17615067
    [Abstract] [Full Text] [Related]

  • 3. The protein interaction network mediated by human SH3 domains.
    Carducci M, Perfetto L, Briganti L, Paoluzi S, Costa S, Zerweck J, Schutkowski M, Castagnoli L, Cesareni G.
    Biotechnol Adv; 2012 Jul 05; 30(1):4-15. PubMed ID: 21740962
    [Abstract] [Full Text] [Related]

  • 4. Domain Interaction Footprint: a multi-classification approach to predict domain-peptide interactions.
    Schillinger C, Boisguerin P, Krause G.
    Bioinformatics; 2009 Jul 01; 25(13):1632-9. PubMed ID: 19376827
    [Abstract] [Full Text] [Related]

  • 5. Computational prediction of protein-protein interactions.
    Obenauer JC, Yaffe MB.
    Methods Mol Biol; 2004 Jul 01; 261():445-68. PubMed ID: 15064475
    [Abstract] [Full Text] [Related]

  • 6. Structure-based prediction of the peptide sequence space recognized by natural and synthetic PDZ domains.
    Smith CA, Kortemme T.
    J Mol Biol; 2010 Sep 17; 402(2):460-74. PubMed ID: 20654621
    [Abstract] [Full Text] [Related]

  • 7. AVID: an integrative framework for discovering functional relationships among proteins.
    Jiang T, Keating AE.
    BMC Bioinformatics; 2005 Jun 01; 6():136. PubMed ID: 15929793
    [Abstract] [Full Text] [Related]

  • 8. Characterization of domain-peptide interaction interface: a case study on the amphiphysin-1 SH3 domain.
    Hou T, Zhang W, Case DA, Wang W.
    J Mol Biol; 2008 Feb 29; 376(4):1201-14. PubMed ID: 18206907
    [Abstract] [Full Text] [Related]

  • 9. A computationally guided protein-interaction screen uncovers coiled-coil interactions involved in vesicular trafficking.
    Zhang H, Chen J, Wang Y, Peng L, Dong X, Lu Y, Keating AE, Jiang T.
    J Mol Biol; 2009 Sep 11; 392(1):228-41. PubMed ID: 19591838
    [Abstract] [Full Text] [Related]

  • 10. Structure-based prediction of the Saccharomyces cerevisiae SH3-ligand interactions.
    Fernandez-Ballester G, Beltrao P, Gonzalez JM, Song YH, Wilmanns M, Valencia A, Serrano L.
    J Mol Biol; 2009 May 15; 388(4):902-16. PubMed ID: 19324052
    [Abstract] [Full Text] [Related]

  • 11. Structure-based prediction of protein-peptide specificity in Rosetta.
    King CA, Bradley P.
    Proteins; 2010 Dec 15; 78(16):3437-49. PubMed ID: 20954182
    [Abstract] [Full Text] [Related]

  • 12. Uncovering new aspects of protein interactions through analysis of specificity landscapes in peptide recognition domains.
    Gfeller D.
    FEBS Lett; 2012 Aug 14; 586(17):2764-72. PubMed ID: 22710167
    [Abstract] [Full Text] [Related]

  • 13. Conserved network motifs allow protein-protein interaction prediction.
    Albert I, Albert R.
    Bioinformatics; 2004 Dec 12; 20(18):3346-52. PubMed ID: 15247093
    [Abstract] [Full Text] [Related]

  • 14. SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family.
    Brannetti B, Via A, Cestra G, Cesareni G, Helmer-Citterich M.
    J Mol Biol; 2000 Apr 28; 298(2):313-28. PubMed ID: 10764600
    [Abstract] [Full Text] [Related]

  • 15. Predicting protein-peptide interactions via a network-based motif sampler.
    Reiss DJ, Schwikowski B.
    Bioinformatics; 2004 Aug 04; 20 Suppl 1():i274-82. PubMed ID: 15262809
    [Abstract] [Full Text] [Related]

  • 16. A regularized discriminative model for the prediction of protein-peptide interactions.
    Lehrach WP, Husmeier D, Williams CK.
    Bioinformatics; 2006 Mar 01; 22(5):532-40. PubMed ID: 16397010
    [Abstract] [Full Text] [Related]

  • 17. A lock-and-key model for protein-protein interactions.
    Morrison JL, Breitling R, Higham DJ, Gilbert DR.
    Bioinformatics; 2006 Aug 15; 22(16):2012-9. PubMed ID: 16787977
    [Abstract] [Full Text] [Related]

  • 18. Computational analysis of human protein interaction networks.
    Ramírez F, Schlicker A, Assenov Y, Lengauer T, Albrecht M.
    Proteomics; 2007 Aug 15; 7(15):2541-52. PubMed ID: 17647236
    [Abstract] [Full Text] [Related]

  • 19. Kernel methods for predicting protein-protein interactions.
    Ben-Hur A, Noble WS.
    Bioinformatics; 2005 Jun 15; 21 Suppl 1():i38-46. PubMed ID: 15961482
    [Abstract] [Full Text] [Related]

  • 20. Recognition specificity of individual EH domains of mammals and yeast.
    Paoluzi S, Castagnoli L, Lauro I, Salcini AE, Coda L, Fre' S, Confalonieri S, Pelicci PG, Di Fiore PP, Cesareni G.
    EMBO J; 1998 Nov 16; 17(22):6541-50. PubMed ID: 9822599
    [Abstract] [Full Text] [Related]

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