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Journal Abstract Search

305 related items for PubMed ID: 21206756

  • 1. The effect of micrococcal nuclease digestion on nucleosome positioning data.
    Chung HR, Dunkel I, Heise F, Linke C, Krobitsch S, Ehrenhofer-Murray AE, Sperling SR, Vingron M.
    PLoS One; 2010 Dec 29; 5(12):e15754. PubMed ID: 21206756
    [Abstract] [Full Text] [Related]

  • 2. Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome positioning.
    Gutiérrez G, Millán-Zambrano G, Medina DA, Jordán-Pla A, Pérez-Ortín JE, Peñate X, Chávez S.
    Epigenetics Chromatin; 2017 Dec 07; 10(1):58. PubMed ID: 29212533
    [Abstract] [Full Text] [Related]

  • 3. Combined micrococcal nuclease and exonuclease III digestion reveals precise positions of the nucleosome core/linker junctions: implications for high-resolution nucleosome mapping.
    Nikitina T, Wang D, Gomberg M, Grigoryev SA, Zhurkin VB.
    J Mol Biol; 2013 Jun 12; 425(11):1946-1960. PubMed ID: 23458408
    [Abstract] [Full Text] [Related]

  • 4. Parallel mapping with site-directed hydroxyl radicals and micrococcal nuclease reveals structural features of positioned nucleosomes in vivo.
    Fuse T, Katsumata K, Morohoshi K, Mukai Y, Ichikawa Y, Kurumizaka H, Yanagida A, Urano T, Kato H, Shimizu M.
    PLoS One; 2017 Jun 12; 12(10):e0186974. PubMed ID: 29073207
    [Abstract] [Full Text] [Related]

  • 5. Characterization of the Nucleosome Landscape by Micrococcal Nuclease-Sequencing (MNase-seq).
    Hoeijmakers WAM, Bártfai R.
    Methods Mol Biol; 2018 Jun 12; 1689():83-101. PubMed ID: 29027167
    [Abstract] [Full Text] [Related]

  • 6. Genome-wide mapping of nucleosome positions in yeast using high-resolution MNase ChIP-Seq.
    Wal M, Pugh BF.
    Methods Enzymol; 2012 Jun 12; 513():233-50. PubMed ID: 22929772
    [Abstract] [Full Text] [Related]

  • 7. Profiling Nucleosome Occupancy by MNase-seq: Experimental Protocol and Computational Analysis.
    Pajoro A, Muiño JM, Angenent GC, Kaufmann K.
    Methods Mol Biol; 2018 Jun 12; 1675():167-181. PubMed ID: 29052192
    [Abstract] [Full Text] [Related]

  • 8. Genome-wide mapping of nucleosome positions in Schizosaccharomyces pombe.
    Lantermann A, Strålfors A, Fagerström-Billai F, Korber P, Ekwall K.
    Methods; 2009 Jul 12; 48(3):218-25. PubMed ID: 19233281
    [Abstract] [Full Text] [Related]

  • 9. A unified computational framework for modeling genome-wide nucleosome landscape.
    Jin H, Finnegan AI, Song JS.
    Phys Biol; 2018 Sep 12; 15(6):066011. PubMed ID: 30113318
    [Abstract] [Full Text] [Related]

  • 10. Analysis of nucleosome positioning using a nucleosome-scanning assay.
    Infante JJ, Law GL, Young ET.
    Methods Mol Biol; 2012 Sep 12; 833():63-87. PubMed ID: 22183588
    [Abstract] [Full Text] [Related]

  • 11. Nucleosome positioning, nucleosome spacing and the nucleosome code.
    Clark DJ.
    J Biomol Struct Dyn; 2010 Jun 12; 27(6):781-93. PubMed ID: 20232933
    [Abstract] [Full Text] [Related]

  • 12. Chromatin structure of the yeast URA3 gene at high resolution provides insight into structure and positioning of nucleosomes in the chromosomal context.
    Tanaka S, Livingstone-Zatchej M, Thoma F.
    J Mol Biol; 1996 Apr 19; 257(5):919-34. PubMed ID: 8632475
    [Abstract] [Full Text] [Related]

  • 13. Rapid and inexpensive preparation of genome-wide nucleosome footprints from model and non-model organisms.
    McKnight LE, Crandall JG, Bailey TB, Banks OGB, Orlandi KN, Truong VN, Donovan DA, Waddell GL, Wiles ET, Hansen SD, Selker EU, McKnight JN.
    STAR Protoc; 2021 Jun 18; 2(2):100486. PubMed ID: 34041500
    [Abstract] [Full Text] [Related]

  • 14. Standardized collection of MNase-seq experiments enables unbiased dataset comparisons.
    Rizzo JM, Bard JE, Buck MJ.
    BMC Mol Biol; 2012 May 06; 13():15. PubMed ID: 22559821
    [Abstract] [Full Text] [Related]

  • 15. Micrococcal Nuclease Digestion of Schizosaccharomyces pombe Chromatin.
    Cam HP, Whitehall S.
    Cold Spring Harb Protoc; 2016 Nov 01; 2016(11):. PubMed ID: 27803256
    [Abstract] [Full Text] [Related]

  • 16. Application of MNase-Seq in the Global Mapping of Nucleosome Positioning in Plants.
    Zhang W, Jiang J.
    Methods Mol Biol; 2018 Nov 01; 1830():353-366. PubMed ID: 30043381
    [Abstract] [Full Text] [Related]

  • 17. DNA Accessibility by MNase Digestions.
    Farrants AÖ.
    Methods Mol Biol; 2018 Nov 01; 1689():77-82. PubMed ID: 29027166
    [Abstract] [Full Text] [Related]

  • 18. Measuring nucleosome occupancy in vivo by micrococcal nuclease.
    Bryant GO.
    Methods Mol Biol; 2012 Nov 01; 833():47-61. PubMed ID: 22183587
    [Abstract] [Full Text] [Related]

  • 19. The DNA-encoded nucleosome organization of a eukaryotic genome.
    Kaplan N, Moore IK, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, Field Y, LeProust EM, Hughes TR, Lieb JD, Widom J, Segal E.
    Nature; 2009 Mar 19; 458(7236):362-6. PubMed ID: 19092803
    [Abstract] [Full Text] [Related]

  • 20. nucMACC: An MNase-seq pipeline to identify structurally altered nucleosomes in the genome.
    Wernig-Zorc S, Kugler F, Schmutterer L, Räß P, Hausmann C, Holzinger S, Längst G, Schwartz U.
    Sci Adv; 2024 Jul 05; 10(27):eadm9740. PubMed ID: 38959309
    [Abstract] [Full Text] [Related]

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