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Journal Abstract Search

158 related items for PubMed ID: 21218994

  • 1. Optimization of Monte Carlo trial moves for protein simulations.
    Betancourt MR.
    J Chem Phys; 2011 Jan 07; 134(1):014104. PubMed ID: 21218994
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  • 4. Protein structure prediction with the UNRES force-field using Replica-Exchange Monte Carlo-with-Minimization; Comparison with MCM, CSA, and CFMC.
    Nanias M, Chinchio M, Ołdziej S, Czaplewski C, Scheraga HA.
    J Comput Chem; 2005 Nov 15; 26(14):1472-86. PubMed ID: 16088925
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  • 7. On the relation between native geometry and conformational plasticity.
    Faísca PF, Gomes CM.
    Biophys Chem; 2008 Dec 15; 138(3):99-106. PubMed ID: 18823691
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  • 9. Monte Carlo simulation of protein folding in the presence of residue-specific binding sites.
    Rossinsky E, Srebnik S.
    Biopolymers; 2005 Dec 05; 79(5):259-68. PubMed ID: 16134169
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  • 12. Comparison between denaturant- and temperature-induced unfolding pathways of protein: a lattice Monte Carlo simulation.
    Choi HS, Huh J, Jo WH.
    Biomacromolecules; 2004 Dec 05; 5(6):2289-96. PubMed ID: 15530044
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  • 15. Optimized Wang-Landau sampling of lattice polymers: ground state search and folding thermodynamics of HP model proteins.
    Wüst T, Landau DP.
    J Chem Phys; 2012 Aug 14; 137(6):064903. PubMed ID: 22897307
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  • 16. A knowledge-based move set for protein folding.
    Chen WW, Yang JS, Shakhnovich EI.
    Proteins; 2007 Feb 15; 66(3):682-8. PubMed ID: 17143895
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  • 17. Simulated annealing coupled replica exchange molecular dynamics--an efficient conformational sampling method.
    Kannan S, Zacharias M.
    J Struct Biol; 2009 Jun 15; 166(3):288-94. PubMed ID: 19272454
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  • 19. Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins.
    Abagyan R, Totrov M.
    J Mol Biol; 1994 Jan 21; 235(3):983-1002. PubMed ID: 8289329
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  • 20. Fast protein structure prediction using Monte Carlo simulations with modal moves.
    Carnevali P, Tóth G, Toubassi G, Meshkat SN.
    J Am Chem Soc; 2003 Nov 26; 125(47):14244-5. PubMed ID: 14624550
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