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Journal Abstract Search

266 related items for PubMed ID: 21363969

  • 1. Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation.
    Xi Y, Yao J, Chen R, Li W, He X.
    Genome Res; 2011 May; 21(5):718-24. PubMed ID: 21363969
    [Abstract] [Full Text] [Related]

  • 2. Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome positioning.
    Gutiérrez G, Millán-Zambrano G, Medina DA, Jordán-Pla A, Pérez-Ortín JE, Peñate X, Chávez S.
    Epigenetics Chromatin; 2017 Dec 07; 10(1):58. PubMed ID: 29212533
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  • 3. MNase-Sensitive Complexes in Yeast: Nucleosomes and Non-histone Barriers.
    Chereji RV, Ocampo J, Clark DJ.
    Mol Cell; 2017 Feb 02; 65(3):565-577.e3. PubMed ID: 28157509
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  • 4. Nucleosome fragility is associated with future transcriptional response to developmental cues and stress in C. elegans.
    Jeffers TE, Lieb JD.
    Genome Res; 2017 Jan 02; 27(1):75-86. PubMed ID: 27979995
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  • 6. Characterization of the Nucleosome Landscape by Micrococcal Nuclease-Sequencing (MNase-seq).
    Hoeijmakers WAM, Bártfai R.
    Methods Mol Biol; 2018 Jan 02; 1689():83-101. PubMed ID: 29027167
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  • 7. RSC-Associated Subnucleosomes Define MNase-Sensitive Promoters in Yeast.
    Brahma S, Henikoff S.
    Mol Cell; 2019 Jan 17; 73(2):238-249.e3. PubMed ID: 30554944
    [Abstract] [Full Text] [Related]

  • 8. MNase Profiling of Promoter Chromatin in Salmonella typhimurium-Stimulated GM12878 Cells Reveals Dynamic and Response-Specific Nucleosome Architecture.
    Cole L, Dennis J.
    G3 (Bethesda); 2020 Jul 07; 10(7):2171-2178. PubMed ID: 32404364
    [Abstract] [Full Text] [Related]

  • 9. Standardized collection of MNase-seq experiments enables unbiased dataset comparisons.
    Rizzo JM, Bard JE, Buck MJ.
    BMC Mol Biol; 2012 May 06; 13():15. PubMed ID: 22559821
    [Abstract] [Full Text] [Related]

  • 10. A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization.
    Gkikopoulos T, Schofield P, Singh V, Pinskaya M, Mellor J, Smolle M, Workman JL, Barton GJ, Owen-Hughes T.
    Science; 2011 Sep 23; 333(6050):1758-60. PubMed ID: 21940898
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  • 11. Parallel mapping with site-directed hydroxyl radicals and micrococcal nuclease reveals structural features of positioned nucleosomes in vivo.
    Fuse T, Katsumata K, Morohoshi K, Mukai Y, Ichikawa Y, Kurumizaka H, Yanagida A, Urano T, Kato H, Shimizu M.
    PLoS One; 2017 Sep 23; 12(10):e0186974. PubMed ID: 29073207
    [Abstract] [Full Text] [Related]

  • 12. Nucleosomes unfold completely at a transcriptionally active promoter.
    Boeger H, Griesenbeck J, Strattan JS, Kornberg RD.
    Mol Cell; 2003 Jun 23; 11(6):1587-98. PubMed ID: 12820971
    [Abstract] [Full Text] [Related]

  • 13. Genome-wide off-rates reveal how DNA binding dynamics shape transcription factor function.
    de Jonge WJ, Brok M, Lijnzaad P, Kemmeren P, Holstege FC.
    Mol Syst Biol; 2020 Oct 23; 16(10):e9885. PubMed ID: 33280256
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  • 16. Differential nuclease sensitivity profiling of chromatin reveals biochemical footprints coupled to gene expression and functional DNA elements in maize.
    Vera DL, Madzima TF, Labonne JD, Alam MP, Hoffman GG, Girimurugan SB, Zhang J, McGinnis KM, Dennis JH, Bass HW.
    Plant Cell; 2014 Oct 23; 26(10):3883-93. PubMed ID: 25361955
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  • 18. Asymmetric nucleosomes flank promoters in the budding yeast genome.
    Ramachandran S, Zentner GE, Henikoff S.
    Genome Res; 2015 Mar 23; 25(3):381-90. PubMed ID: 25491770
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  • 20. Profiling Nucleosome Occupancy by MNase-seq: Experimental Protocol and Computational Analysis.
    Pajoro A, Muiño JM, Angenent GC, Kaufmann K.
    Methods Mol Biol; 2018 Mar 23; 1675():167-181. PubMed ID: 29052192
    [Abstract] [Full Text] [Related]

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