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Journal Abstract Search

108 related items for PubMed ID: 21470886

  • 21. Thermodynamics of specific and non-specific DNA binding by the c-Myb DNA-binding domain.
    Oda M, Furukawa K, Ogata K, Sarai A, Nakamura H.
    J Mol Biol; 1998 Feb 27; 276(3):571-90. PubMed ID: 9551098
    [Abstract] [Full Text] [Related]

  • 22. Structure, thermodynamics and cooperativity of the glucocorticoid receptor DNA-binding domain in complex with different response elements. Molecular dynamics simulation and free energy perturbation studies.
    Eriksson MA, Nilsson L.
    J Mol Biol; 1995 Oct 27; 253(3):453-72. PubMed ID: 7473727
    [Abstract] [Full Text] [Related]

  • 23. A theoretical study of the physicochemical mechanisms associated with DNA recognition modulation in artificial zinc-finger proteins.
    Mori H, Ueno-Noto K.
    J Phys Chem B; 2011 Apr 28; 115(16):4774-80. PubMed ID: 21469672
    [Abstract] [Full Text] [Related]

  • 24. The solution structure of a fungal AREA protein-DNA complex: an alternative binding mode for the basic carboxyl tail of GATA factors.
    Starich MR, Wikström M, Arst HN, Clore GM, Gronenborn AM.
    J Mol Biol; 1998 Apr 03; 277(3):605-20. PubMed ID: 9533883
    [Abstract] [Full Text] [Related]

  • 25. Effects of bulkiness and hydrophobicity of an aliphatic amino acid in the recognition helix of the GAGA zinc finger on the stability of the hydrophobic core and DNA binding affinity.
    Dhanasekaran M, Negi S, Imanishi M, Suzuki M, Sugiura Y.
    Biochemistry; 2008 Nov 11; 47(45):11717-24. PubMed ID: 18855425
    [Abstract] [Full Text] [Related]

  • 26. The energetics of HMG box interactions with DNA: thermodynamics of the DNA binding of the HMG box from mouse sox-5.
    Privalov PL, Jelesarov I, Read CM, Dragan AI, Crane-Robinson C.
    J Mol Biol; 1999 Dec 10; 294(4):997-1013. PubMed ID: 10588902
    [Abstract] [Full Text] [Related]

  • 27. Different contributions of three zinc fingers of transcription factor Sp1 to DNA recognition: novel binding mode of N-terminal finger 1.
    Saegusa N, Yokono M, Matsushita K, Sugiura Y.
    Nucleic Acids Symp Ser; 1997 Dec 10; (37):151-2. PubMed ID: 9586044
    [Abstract] [Full Text] [Related]

  • 28. Comparison of intrinsic stacking energies of ten unique dinucleotide steps in A-RNA and B-DNA duplexes. Can we determine correct order of stability by quantum-chemical calculations?
    Svozil D, Hobza P, Sponer J.
    J Phys Chem B; 2010 Jan 21; 114(2):1191-203. PubMed ID: 20000584
    [Abstract] [Full Text] [Related]

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  • 30. Structure and DNA binding characteristics of the three-Cys(2)His(2) domain of mouse testis zinc finger protein.
    Chou CC, Lou YC, Tang TK, Chen C.
    Proteins; 2010 Aug 01; 78(10):2202-12. PubMed ID: 20544958
    [Abstract] [Full Text] [Related]

  • 31. A folding transition and novel zinc finger accessory domain in the transcription factor ADR1.
    Bowers PM, Schaufler LE, Klevit RE.
    Nat Struct Biol; 1999 May 01; 6(5):478-85. PubMed ID: 10331877
    [Abstract] [Full Text] [Related]

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  • 33. Leading RNA tertiary interactions: structures, energies, and water insertion of A-minor and P-interactions. A quantum chemical view.
    Sponer JE, Réblova K, Mokdad A, Sychrovský V, Leszczynski J, Sponer J.
    J Phys Chem B; 2007 Aug 02; 111(30):9153-64. PubMed ID: 17602515
    [Abstract] [Full Text] [Related]

  • 34. Major groove recognition by three-stranded beta-sheets: affinity determinants and conserved structural features.
    Connolly KM, Ilangovan U, Wojciak JM, Iwahara M, Clubb RT.
    J Mol Biol; 2000 Jul 21; 300(4):841-56. PubMed ID: 10891272
    [Abstract] [Full Text] [Related]

  • 35. Solution structure of Gfi-1 zinc domain bound to consensus DNA.
    Lee S, Doddapaneni K, Hogue A, McGhee L, Meyers S, Wu Z.
    J Mol Biol; 2010 Apr 09; 397(4):1055-66. PubMed ID: 20153336
    [Abstract] [Full Text] [Related]

  • 36. Dissection of the DNA-binding domain of Xenopus laevis TFIIIA. Quantitative DNase I footprinting analysis of specific complexes between a 5 S RNA gene fragment and N-terminal fragments of TFIIIA containing three, four or five zinc-finger domains.
    Hansen PK, Christensen JH, Nyborg J, Lillelund O, Thøgersen HC.
    J Mol Biol; 1993 Sep 20; 233(2):191-202. PubMed ID: 8377197
    [Abstract] [Full Text] [Related]

  • 37. NMR and molecular dynamics studies of the hydration of a zinc finger-DNA complex.
    Tsui V, Radhakrishnan I, Wright PE, Case DA.
    J Mol Biol; 2000 Oct 06; 302(5):1101-17. PubMed ID: 11183777
    [Abstract] [Full Text] [Related]

  • 38. Systematic classification and analysis of themes in protein-DNA recognition.
    Zhou P, Tian F, Ren Y, Shang Z.
    J Chem Inf Model; 2010 Aug 23; 50(8):1476-88. PubMed ID: 20726602
    [Abstract] [Full Text] [Related]

  • 39. Semiempirical quantum mechanical method PM6-DH2X describes the geometry and energetics of CK2-inhibitor complexes involving halogen bonds well, while the empirical potential fails.
    Dobes P, Rezác J, Fanfrlík J, Otyepka M, Hobza P.
    J Phys Chem B; 2011 Jul 07; 115(26):8581-9. PubMed ID: 21648479
    [Abstract] [Full Text] [Related]

  • 40. Transcription regulation by steroid hormones: a computer simulation study.
    Kothekar V.
    J Biomol Struct Dyn; 1992 Aug 07; 10(1):49-62. PubMed ID: 1418746
    [Abstract] [Full Text] [Related]

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