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Journal Abstract Search

94 related items for PubMed ID: 21557318

  • 1. Free-energy function for discriminating the native fold of a protein from misfolded decoys.
    Yasuda S, Yoshidome T, Harano Y, Roth R, Oshima H, Oda K, Sugita Y, Ikeguchi M, Kinoshita M.
    Proteins; 2011 Jul; 79(7):2161-71. PubMed ID: 21557318
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  • 2. Free-energy function based on an all-atom model for proteins.
    Yoshidome T, Oda K, Harano Y, Roth R, Sugita Y, Ikeguchi M, Kinoshita M.
    Proteins; 2009 Dec; 77(4):950-61. PubMed ID: 19688821
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  • 4. Distinguishing native conformations of proteins from decoys with an effective free energy estimator based on the OPLS all-atom force field and the Surface Generalized Born solvent model.
    Felts AK, Gallicchio E, Wallqvist A, Levy RM.
    Proteins; 2002 Aug 01; 48(2):404-22. PubMed ID: 12112706
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  • 7. A reduced protein model with accurate native-structure identification ability.
    Betancourt MR.
    Proteins; 2003 Dec 01; 53(4):889-907. PubMed ID: 14635131
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  • 8. Hydrophobic potential of mean force as a solvation function for protein structure prediction.
    Lin MS, Fawzi NL, Head-Gordon T.
    Structure; 2007 Jun 01; 15(6):727-40. PubMed ID: 17562319
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  • 9. A physical reference state unifies the structure-derived potential of mean force for protein folding and binding.
    Liu S, Zhang C, Zhou H, Zhou Y.
    Proteins; 2004 Jul 01; 56(1):93-101. PubMed ID: 15162489
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  • 12. Distance-dependent atomic knowledge-based force in protein fold recognition.
    Mirzaie M, Sadeghi M.
    Proteins; 2012 Mar 01; 80(3):683-90. PubMed ID: 22231226
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  • 13. ProVal: a protein-scoring function for the selection of native and near-native folds.
    Berglund A, Head RD, Welsh EA, Marshall GR.
    Proteins; 2004 Feb 01; 54(2):289-302. PubMed ID: 14696191
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  • 17. Protein structure evaluation using an all-atom energy based empirical scoring function.
    Narang P, Bhushan K, Bose S, Jayaram B.
    J Biomol Struct Dyn; 2006 Feb 01; 23(4):385-406. PubMed ID: 16363875
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